Gene SO_0165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_0165 
SymbolgspC 
ID1168052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp171350 
End bp172276 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content45% 
IMG OID637342168 
Productgeneral secretion pathway protein C 
Protein accessionNP_715807 
Protein GI24371765 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3031] Type II secretory pathway, component PulC 
TIGRFAM ID[TIGR01713] general secretion pathway protein C 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTTAT TAGATAAAGT TATCGCAAAA GCTACAGGTA TTCCGCATAA GCCATTGAGC 
CAAGTCGTTT TCTGGTGTGG TTTTATCCTA AGTTTACTCT TAGCTGCGCA AATTACATGG 
AAGCTCGTAC CTACCTCATC TTCTCCTACG GCTTGGTCTC CCTCTGCGGT GACTACGACT 
GGTAAAGGGG CTGGGCAAAT CGATCTCGAT GGATTACAGC AACTTGCGCT TTTTGGTCGA 
GCCGATGCCA AAACGGATAA ACCTAAAGCC GAAGTGGTTG AAACCGTTAC CGATGCACCT 
AAGACCTCCT TATCTATCCA ACTGACAGGT GTTGTGGCAT CCACCGCCGA TCAAAAAGGT 
CTGGCGATTA TTGAATCCAG TGGCAGCCAA GAAACCTACA GCTTGGGCGA TAAAATTAAG 
GGAACATCCG CTTCGTTAAA AGAAGTCTAT GCTGACCGCA TTATCATTAC CAATGCCGGT 
CGCTATGAAA CCCTGATGCT TGATGGTTTG GTTTACACCA GCCAAAGTCC CGCGAATCAA 
CAATTACAGA AGGCCAAGAG TGGAAAACCT GAAGTCGTTA GCCGAGTAGA CCAACGCAAG 
AATGCTGAAA TCTCTCAAGA GCTGGCTGAA TCACGTACTG AACTCTTAGC CGATCCTAGC 
AAAATCACTG ATTACATCGC GATTTCTCCC GTTAAGCAGG GAGAAAGCGT TGTCGGTTAT 
CGCCTCAATC CGGGCAAAGA TGTGAACTTA TTTAAGCAAG CGGGTTTTAA GCCCAATGAT 
CTTGCGAAAA CCATTAATGG GTACGATCTG ACTGTGATGA GTCAGGCGTT AGAAATGATG 
AGCCAATTAC CTGAATTAAC TGAAGTTTCC ATTATGGTTG AGCGGGAAGG ACAATTGGTT 
GAAATCATGT TTAGTTTGCC GCAATAA
 
Protein sequence
MDLLDKVIAK ATGIPHKPLS QVVFWCGFIL SLLLAAQITW KLVPTSSSPT AWSPSAVTTT 
GKGAGQIDLD GLQQLALFGR ADAKTDKPKA EVVETVTDAP KTSLSIQLTG VVASTADQKG 
LAIIESSGSQ ETYSLGDKIK GTSASLKEVY ADRIIITNAG RYETLMLDGL VYTSQSPANQ 
QLQKAKSGKP EVVSRVDQRK NAEISQELAE SRTELLADPS KITDYIAISP VKQGESVVGY 
RLNPGKDVNL FKQAGFKPND LAKTINGYDL TVMSQALEMM SQLPELTEVS IMVEREGQLV 
EIMFSLPQ