Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_0003 |
Symbol | trmE |
ID | 1167901 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 2589 |
End bp | 3962 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637342012 |
Product | tRNA modification GTPase TrmE |
Protein accession | NP_715645 |
Protein GI | 24371603 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTATTT CCGTGACAAC TGACACTATC GTGGCACAGG CCACCGCGCC CGGACGAGGC GGAGTGGGTA TCATACGTAT CTCAGGTGAT AAGGCGACGA ACGTTGCCAT GGCCGTATTA GGTCATTTGC CTAAACCCCG TTATGCCGAT TATTGCTACT TTAAAAGTGC CTCTGGCCAA GTCATAGACC AAGGCATAGC CTTGTTCTTT AAAGGCCCAA ACTCCTTCAC CGGTGAAGAT GTTTTAGAGC TACAGGGCCA CGGCGGTCAA ATCGTTCTCG ACATGTTGAT CAAACGCGTG CTCGAAGTTG AAGGCATTCG CATCGCCAAA CCCGGCGAGT TTAGTGAACA AGCCTTTATG AACGACAAGC TCGACTTAAC CCAAGCCGAA GCCATTGCCG ACCTTATTGA TGCTACCAGT GAACAAGCGG CTAAAAGCGC GCTGCAATCG CTCCAAGGTG AGTTTTCAAA GGAAGTGCAT GAGCTGGTGG ACCAAGTCAC CCATCTGCGT TTATACGTCG AAGCCGCCAT TGATTTCCCC GATGAAGAAG TCGACTTTTT AAGTGATGGC AAAATAGCCA ATGCGCTGTA TAAAATCATC GACAAACTCA TTGCTGTTCA GGCCAGTGCC AAGCAAGGTT CTATCATTCG TGAAGGGATG AAAGTGGTGA TTGCTGGTCG TCCAAATGCC GGAAAATCGA GCCTACTCAA CGCCCTTGCA GGTAAAGAGT CGGCCATTGT GACCGAAATT GCCGGTACCA CACGCGATGT GTTGCGCGAA CATATCCATT TAGATGGTAT GCCGCTGCAT ATTATCGACA CCGCAGGTTT ACGCGATACA ACCGATACCG TTGAACAAAT TGGTATCGAG CGCGCATGGA ATGAAATCAA CAGCGCCGAT CGGGTGTTAT TTATGGTCGA TGGCACAACA ACCACGGCTG TCGATCCCCA CGATATTTGG CCCGATTTTA TCAATCGCCT CCCCACCAAT TTAGGGGTAA CTGTGATCCG TAATAAAGCG GATCTCACCG GTGAAAACCT CGAAATGACC GAAGAAAAAG GCTATAGCGT CTATCGGATC TCGGCCAAAA CAGGCCTCGG TGTTGACGAG TTAAAACAGC ACCTTAAATC GCTAATGGGT TATCAAAGCA ACCTCGAAGG TGGCTTTATC GCCCGTCGCC GTCACCTTGA GGCCTTAGAA ATAGCCGCAA GCCATCTGCA ACTCGGTAAA GAACAATTAG AAGTTTACCT CGCGGGCGAA CTATTAGCGG AAGAACTGAG AATGGCGCAA TTAGCCCTAT CGGAAATTAC CGGACGTTTT ACCTCAGACG ATCTACTCGG CAAAATTTTT AGCTCATTCT GTATCGGTAA GTAA
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Protein sequence | MGISVTTDTI VAQATAPGRG GVGIIRISGD KATNVAMAVL GHLPKPRYAD YCYFKSASGQ VIDQGIALFF KGPNSFTGED VLELQGHGGQ IVLDMLIKRV LEVEGIRIAK PGEFSEQAFM NDKLDLTQAE AIADLIDATS EQAAKSALQS LQGEFSKEVH ELVDQVTHLR LYVEAAIDFP DEEVDFLSDG KIANALYKII DKLIAVQASA KQGSIIREGM KVVIAGRPNA GKSSLLNALA GKESAIVTEI AGTTRDVLRE HIHLDGMPLH IIDTAGLRDT TDTVEQIGIE RAWNEINSAD RVLFMVDGTT TTAVDPHDIW PDFINRLPTN LGVTVIRNKA DLTGENLEMT EEKGYSVYRI SAKTGLGVDE LKQHLKSLMG YQSNLEGGFI ARRRHLEALE IAASHLQLGK EQLEVYLAGE LLAEELRMAQ LALSEITGRF TSDDLLGKIF SSFCIGK
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