Gene SNSL254_pSN254_0100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_pSN254_0100 
SymboltraU 
ID4929376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_009140 
Strand+ 
Start bp86719 
End bp87726 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content50% 
IMG OID642572399 
Producttype IV conjugative transfer system protein TraU 
Protein accessionYP_001101974 
Protein GI134047249 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value0.185044 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCAAA AAATTCTACG GATCATGGCC GTTAGCGCGG TCTTTTGGGT TGGTTCGGTA 
TCGGCTGACC CTGGGTGCCA GAATGCGGAA GTGATCGGCG GAAAACTGAT TACTGACATC 
TGCTGGAGCT GTATTTTCCC TATCAAAGTA GCAGGGGTTC CTATAAGTGG TGGAGGCGGA 
TCATTCCCGA GTGAAGCCGT AAGCAACCCT CTGTGTATGT GCGAGGATAA TCTAGGGGTC 
CCTCGGCCTG GAGTCACCAC TTCTATGTGG GAGCCAGCAC GGCTCGTTGA ATTTCAGAGA 
GTGCCTGGCT GCTCATCAGT CTTGAATGGT GTCAGGTTCC CGTTTGATAG GACTAACCAA 
GGGCATCATG GCATGGGAGA CATGGATGGT GGTGATGGTT CTTTTATGCA CTATCACTAC 
TATGCGTTTC CTCTGTTGGT GATGCTCGAT TTATTTATTA AGCAGACCTG TAATGCTGAT 
GGGTATATGG ATCTCGACAT CATGTACATG TCGGAGCTCG ACCCGACCTG GAACAATGAT 
GAGCTCGCTT TTTTTACCAA TCCAGAGGCG GCGGCAGTAG CAAACCCAAT TGCGGCGGCT 
GCGTGTACTG CTGATGCTGT CTCATCAACC GCTGGAAAAC CTTTAAAACA GCTTTTCTGG 
TGTGCTGGTT CATGGGGCAC CCTGTATCCA TTTAGTGGCA ACCAGAATGG TGGAAAAGGT 
GTTATCCGCG ATAGCAGTCT TCTTAGCACA AGGGTTCTGG CTGCTTTGCA TCGCCGGGGG 
TTAGCGTGGA AGACAATGGG TTCTGAGGCT ATGTGTAGAG GCGTTATTAG CCCAACACTA 
CCCAAAACGC AGTACAAATT CACGCTATTG CATCCGGTTC CAGAGACAAA CTCATCTCAC 
GTAATTGGCG AATCCACTCT TACGTGGGGT CTGGCGCGAA CTATACCGGC AATTGGGCAA 
GACCCTATTT ACACCATCTG GCGATGGAAT GATTGCTGTA ACAATTGA
 
Protein sequence
MMQKILRIMA VSAVFWVGSV SADPGCQNAE VIGGKLITDI CWSCIFPIKV AGVPISGGGG 
SFPSEAVSNP LCMCEDNLGV PRPGVTTSMW EPARLVEFQR VPGCSSVLNG VRFPFDRTNQ 
GHHGMGDMDG GDGSFMHYHY YAFPLLVMLD LFIKQTCNAD GYMDLDIMYM SELDPTWNND 
ELAFFTNPEA AAVANPIAAA ACTADAVSST AGKPLKQLFW CAGSWGTLYP FSGNQNGGKG 
VIRDSSLLST RVLAALHRRG LAWKTMGSEA MCRGVISPTL PKTQYKFTLL HPVPETNSSH 
VIGESTLTWG LARTIPAIGQ DPIYTIWRWN DCCNN