Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A4486 |
Symbol | rpoB |
ID | 6486909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 4357362 |
End bp | 4361390 |
Gene Length | 4029 bp |
Protein Length | 1342 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642739719 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002043405 |
Protein GI | 194444496 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0000000000000617327 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGTTTACT CCTATACCGA GAAAAAACGT ATTCGTAAGG ATTTTGGTAA ACGTCCACAA GTTCTGGATG TACCTTATCT CCTTTCTATC CAGCTTGACT CGTTTCAGAA GTTTATCGAG CAAGATCCTG AAGGGCAGTA CGGCCTGGAA GCAGCCTTCC GTTCCGTGTT CCCGATTCAG AGCTACAGCG GTAATTCCGA GCTGCAGTAC GTCAGCTACC GCCTTGGCGA ACCGGTGTTT GACGTTCAGG AATGTCAGAT CCGTGGCGTG ACCTATTCCG CACCGCTGCG CGTAAAACTG CGTCTGGTGA TCTACGAGCG CGAAGCGCCG GAAGGCACCG TTAAAGACAT TAAAGAACAA GAAGTCTACA TGGGCGAAAT TCCGCTCATG ACCGACAACG GTACCTTTGT TATCAACGGT ACTGAGCGTG TTATCGTTTC TCAGCTGCAC CGTAGTCCGG GCGTCTTCTT TGACTCCGAC AAAGGTAAAA CCCACTCTTC GGGTAAAGTG CTGTATAACG CGCGCATCAT TCCTTACCGT GGTTCCTGGC TGGACTTCGA ATTCGATCCG AAGGACAACC TGTTCGTGCG TATCGACCGT CGCCGTAAAC TGCCTGCGAC CATCATCCTG CGTGCGCTGA ACTACACCAC TGAGCAGATC CTTGACCTGT TCTTTGAGAA AGTCGTCTTC GAAATTCGCG ACAACAAGCT GCAGATGGAG CTGATTCCAG AACGTCTGCG CGGCGAAACT GCGTCGTTCG ATATCGAAGC TAACGGCAAG GTGTACGTTG AAAAAGGCCG TCGCATTACC GCGCGTCATA TCCGTCAGCT GGAAAAAGAC GATATCAAGC ATATCGAAGT TCCGGTTGAG TACATCGCAG GTAAAGTCGT CTCTAAAGAC TACGTTGACG AATCCACTGG CGAGCTGATC TGCGCGGCGA ACATGGAGCT GAGCCTGGAT CTGCTGGCTA AGCTGAGCCA GTCCGGCCAC AAGCGTATCG AAACGCTGTT TACCAACGAT CTGGACCACG GCCCGTACAT TTCTGAAACG GTACGCGTCG ACCCAACTAA CGATCGTCTG AGCGCGCTGG TAGAAATCTA CCGCATGATG CGCCCTGGTG AGCCGCCGAC TCGCGAAGCG GCTGAAAGCC TGTTCGAGAA CCTGTTCTTC TCCGAAGACC GCTATGACCT GTCTGCGGTG GGTCGTATGA AGTTCAACCG TTCTCTGCTG CGCGACGAAA TCGAAGGTTC CGGTATCCTG AGCAAAGACG ACATCATTGA TGTCATGAAG AAGCTCATCG ATATCCGTAA CGGTAAAGGC GAAGTGGATG ATATCGACCA CCTCGGCAAC CGTCGTATCC GTTCCGTCGG CGAAATGGCG GAAAACCAGT TCCGCGTTGG CCTGGTGCGT GTAGAGCGTG CGGTGAAAGA GCGTCTGTCT CTGGGCGATC TGGATACCCT GATGCCTCAG GATATGATCA ACGCCAAGCC GATTTCCGCC GCAGTGAAAG AGTTCTTTGG TTCCAGCCAG CTGTCTCAGT TTATGGACCA GAACAACCCG CTGTCTGAGA TTACGCACAA ACGTCGTATC TCCGCACTCG GCCCAGGCGG TCTGACCCGC GAACGCGCAG GCTTCGAAGT TCGAGACGTA CACCCGACGC ACTACGGTCG CGTATGTCCT ATCGAAACGC CGGAAGGTCC GAACATCGGT CTGATCAACT CCCTGTCCGT GTACGCACAG ACTAACGAAT ATGGCTTCCT TGAGACGCCG TACCGTCGTG TGGTTGATGG CGTGGTCACT GACGAAATTC ATTACCTGTC TGCTATCGAA GAAGGCAACT ACGTTATCGC TCAGGCGAAC TCCAACCTGG ATGACGAAGG CCACTTTGTA GAAGATCTGG TGACCTGCCG TAGCAAAGGC GAATCCAGCT TGTTCAGCCG CGACCAGGTT GACTACATGG ACGTATCCAC CCAGCAGGTG GTCTCCGTCG GTGCGTCCCT GATCCCGTTC CTGGAACACG ATGACGCCAA CCGTGCATTG ATGGGTGCGA ACATGCAACG TCAGGCGGTT CCGACTCTGC GTGCTGATAA GCCGCTGGTG GGTACCGGTA TGGAACGTGC TGTCGCCGTC GACTCCGGTG TTACTGCAGT AGCTAAACGT GGCGGTACTG TTCAGTACGT GGATGCATCC CGTATCGTTA TCAAAGTTAA CGAAGACGAG ATGTACCCGG GCGAAGCGGG TATCGACATC TATAACCTGA CCAAATACAC CCGCTCTAAC CAGAACACCT GTATCAACCA GATGCCATGT GTGTCTCTGG GCGAGCCGGT TGAACGCGGC GACGTGCTGG CAGACGGTCC GTCCACCGAC CTCGGCGAAC TGGCGCTCGG TCAGAACATG CGCGTGGCGT TCATGCCGTG GAACGGCTAC AACTTCGAAG ACTCCATCCT CGTATCCGAG CGTGTTGTCC AGGAAGACCG TTTCACCACC ATCCACATTC AGGAACTGGC GTGCGTGTCC CGTGACACCA AGCTGGGGCC GGAAGAGATC ACCGCTGATA TCCCGAACGT GGGTGAAGCT GCGCTCTCCA AACTGGATGA ATCCGGTATC GTTTACATCG GCGCGGAAGT GACCGGCGGT GACATTCTGG TCGGTAAGGT GACGCCGAAA GGTGAAACCC AGCTGACGCC GGAAGAGAAA CTGCTGCGTG CGATCTTCGG TGAGAAAGCG TCTGACGTTA AAGACTCTTC TCTGCGCGTA CCTAACGGTG TCTCCGGTAC GGTTATCGAC GTTCAGGTCT TTACTCGCGA TGGCGTAGAA AAAGACAAAC GTGCTCTGGA AATCGAAGAG ATGCAGCTCA AGCAGGCGAA AAAAGACCTG TCTGAAGAAC TGCAGATCCT CGAAGCGGGC CTGTTTAGCC GTATCCGTGC GGTGCTGGTG TCCGGCGGCG TTGAAGCTGA GAAGCTCGAC AAACTGCCGC GCGACCGCTG GCTGGAACTC GGTCTGACCG ACGAAGAGAA ACAAAATCAG CTGGAACAAC TGGCTGAGCA GTATGACGAA CTGAAACACG AGTTCGAGAA AAAACTTGAA GCGAAGCGCC GTAAAATCAC CCAGGGCGAC GATCTGGCGC CGGGCGTGCT GAAGATCGTG AAGGTCTATC TGGCCGTTAA ACGCCGTATC CAGCCGGGTG ATAAGATGGC AGGTCGTCAC GGTAACAAGG GTGTTATCTC TAAGATCAAC CCGATCGAAG ACATGCCTTA CGATGAAAAC GGCACGCCGG TCGACATCGT ACTGAACCCG CTGGGCGTAC CGTCTCGTAT GAACATCGGT CAGATTCTGG AAACCCACCT GGGTATGGCT GCGAAAGGTA TTGGCGACAA GATTAACGCC ATGCTGAAAC AGCAGCAGGA AGTCGCGAAA CTGCGCGAAT TCATCCAGCG TGCCTACGAT CTGGGCGCCG ACGTTCGTCA GAAAGTCGAC CTGAGCACCT TCAGCGATGA TGAAGTGCTG CGTCTGGCAG AAAACCTGCG TAAAGGTATG CCGATTGCCA CACCAGTGTT TGACGGTGCG AAAGAAGCGG AAATCAAAGA GCTGCTGAAA CTGGGCGACC TGCCGACCTC CGGTCAGATC ACCCTGTTCG ATGGCCGTAC GGGTGAACAG TTCGAACGTC CGGTAACCGT CGGTTACATG TACATGCTGA AACTGAACCA CCTGGTTGAT GACAAGATGC ATGCGCGTTC TACCGGTTCT TACAGCCTGG TTACTCAGCA GCCGCTGGGT GGTAAGGCGC AGTTCGGTGG TCAGCGCTTC GGGGAGATGG AAGTGTGGGC GCTGGAAGCT TACGGCGCCG CCTACACCCT GCAGGAAATG CTCACCGTTA AGTCTGATGA CGTGAACGGT CGTACCAAGA TGTATAAGAA CATCGTGGAC GGCAACCATC AGATGGAACC GGGTATGCCG GAATCCTTCA ACGTTCTGTT GAAAGAGATC CGCTCGCTGG GCATCAACAT CGAACTGGAA GACGAGTAA
|
Protein sequence | MVYSYTEKKR IRKDFGKRPQ VLDVPYLLSI QLDSFQKFIE QDPEGQYGLE AAFRSVFPIQ SYSGNSELQY VSYRLGEPVF DVQECQIRGV TYSAPLRVKL RLVIYEREAP EGTVKDIKEQ EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDNLFVRIDR RRKLPATIIL RALNYTTEQI LDLFFEKVVF EIRDNKLQME LIPERLRGET ASFDIEANGK VYVEKGRRIT ARHIRQLEKD DIKHIEVPVE YIAGKVVSKD YVDESTGELI CAANMELSLD LLAKLSQSGH KRIETLFTND LDHGPYISET VRVDPTNDRL SALVEIYRMM RPGEPPTREA AESLFENLFF SEDRYDLSAV GRMKFNRSLL RDEIEGSGIL SKDDIIDVMK KLIDIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS LGDLDTLMPQ DMINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEITHKRRI SALGPGGLTR ERAGFEVRDV HPTHYGRVCP IETPEGPNIG LINSLSVYAQ TNEYGFLETP YRRVVDGVVT DEIHYLSAIE EGNYVIAQAN SNLDDEGHFV EDLVTCRSKG ESSLFSRDQV DYMDVSTQQV VSVGASLIPF LEHDDANRAL MGANMQRQAV PTLRADKPLV GTGMERAVAV DSGVTAVAKR GGTVQYVDAS RIVIKVNEDE MYPGEAGIDI YNLTKYTRSN QNTCINQMPC VSLGEPVERG DVLADGPSTD LGELALGQNM RVAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELACVS RDTKLGPEEI TADIPNVGEA ALSKLDESGI VYIGAEVTGG DILVGKVTPK GETQLTPEEK LLRAIFGEKA SDVKDSSLRV PNGVSGTVID VQVFTRDGVE KDKRALEIEE MQLKQAKKDL SEELQILEAG LFSRIRAVLV SGGVEAEKLD KLPRDRWLEL GLTDEEKQNQ LEQLAEQYDE LKHEFEKKLE AKRRKITQGD DLAPGVLKIV KVYLAVKRRI QPGDKMAGRH GNKGVISKIN PIEDMPYDEN GTPVDIVLNP LGVPSRMNIG QILETHLGMA AKGIGDKINA MLKQQQEVAK LREFIQRAYD LGADVRQKVD LSTFSDDEVL RLAENLRKGM PIATPVFDGA KEAEIKELLK LGDLPTSGQI TLFDGRTGEQ FERPVTVGYM YMLKLNHLVD DKMHARSTGS YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVNG RTKMYKNIVD GNHQMEPGMP ESFNVLLKEI RSLGINIELE DE
|
| |