Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A4219 |
Symbol | hemD |
ID | 6483262 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 4110622 |
End bp | 4111362 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642739472 |
Product | uroporphyrinogen-III synthase |
Protein accession | YP_002043171 |
Protein GI | 194446231 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1587] Uroporphyrinogen-III synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.374545 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTATTC TGATCACCCG CCCCTCTCCC GCAGGGGAAG CGTTAGTGAG CCGTCTGCGC GCACTGGGGC AGGTGGCCTG GAGTTTTCCA CTGATTGAAT TTGTCGCCGG TCGGGAGCTA CCCACCCTGG CCGACCGCCT GGCGACGCTC GCGGAAAACG ATCTGGTTTT TGCCCTTTCA CAGCACGCTG TCGCCTTTGC TCACGCCCAG CTCCAGCGGG ATGGTCGAAA CTGGCCTGCG TCGCCGCGCT ATTTCGCGAT TGGCCGCACC ACGGCGCTCG CCCTTCATAC CGTTAGCGGG TTCGATATTC GTTATCCATT GGATCGGGAA ATCAGCGAAG CCTTGCTACA ATTACCTGAA TTACAAAATA TTGCGGGCAA ACGCGCGCTG ATTTTGCGTG GCAATGGCGG CCGCGAACTG CTGGGCGAAA CCCTGACAGC TCGCGGAGCC GAAGTCAGTT TTTGTGAATG TTATCAACGA TGTGCGAAAC ATTACGATGG CGCGGAAGAA GCGATGCGCT GGCATACTCG CGGCGTAACA ACGCTTGTTG TTACCAGCGG CGAGATGTTG CAACGGCTCT GGTCGCTGAC TCCCGAGTGG TATCGTGAGC ACTGGTTACT ACGCTGTCGG CTATTGGTCG TCAGTGAACG TCTGGCGCAC CTCGCCCGGG AGCTGGGCTG GCAAGATATT AAGGTCGCTG ATAACGCCGA CAACGATGCG CTGTTGCGCG CATTACAATA A
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Protein sequence | MSILITRPSP AGEALVSRLR ALGQVAWSFP LIEFVAGREL PTLADRLATL AENDLVFALS QHAVAFAHAQ LQRDGRNWPA SPRYFAIGRT TALALHTVSG FDIRYPLDRE ISEALLQLPE LQNIAGKRAL ILRGNGGREL LGETLTARGA EVSFCECYQR CAKHYDGAEE AMRWHTRGVT TLVVTSGEML QRLWSLTPEW YREHWLLRCR LLVVSERLAH LARELGWQDI KVADNADNDA LLRALQ
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