Gene SNSL254_A4132 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A4132 
Symbol 
ID6482555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp4024000 
End bp4025337 
Gene Length1338 bp 
Protein Length445 aa 
Translation table11 
GC content56% 
IMG OID642739388 
Productinner membrane protein YicO 
Protein accessionYP_002043097 
Protein GI194442949 
COG category[R] General function prediction only 
COG ID[COG2252] Permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0691662 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones93 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAAC AACACACCAC CCAGGCTTCT GGTCAGGGTA TGCTGGAACG CGTGTTTAAA 
CTGCGCGAAC ATGGCACGAC GGCACGAACC GAAGTGATCG CCGGTTTTAC CACTTTCCTG
ACGATGGTTT ATATCGTTTT TGTTAACCCG CAAATTCTGG GCGTAGCTGG CATGGACACC
AGCGCCGTCT TTGTGACCAC CTGTCTGATT GCGGCCTTTG GCAGTATTCT GATGGGTCTG
TTCGCTAACC TGCCGGTGGC GCTGGCGCCC GCGATGGGGC TGAATGCGTT CTTTGCCTTC
GTGGTTGTGC AGGCAATGGG ACTGCCGTGG CAGGTAGGCA TGGGCGCCAT TTTCTGGGGC
GCTGTTGGTC TTTTATTGCT GACTATCTTC CGCGTGCGTT ACTGGATGAT CGCCAACATT
CCGGTCAGCC TGCGCGTGGG CATCACCAGC GGCATCGGCC TGTTTATCGG CATGATGGGG
CTGAAAAACG CCGGCGTGAT CGTCGCTAAC CCGGAAACGC TGGTCAGCAT CGGCAACCTG
ACTTCGCACA GCGTGCTGCT GGGGGTTCTC GGATTCTTTA TTATTGCGAT TCTCGCTTCG
CGCAACATTC ATGCGGCGGT GCTGGTGTCC ATCATCGTCA CGACGCTGCT TGGCTGGATA
ATGGGCGATG TGCACTACAA CGGCATTGTC TCCGCGCCGC CAAGCGTCAC CAGCGTGGTA
GGGCATGTCG ATTTGGCAGG CTCGTTCAAT CTTGGCCTGG CGGGGGTTAT TTTCTCCTTC
ATGCTGGTAA ACCTGTTTGA CTCCTCCGGT ACGCTGATTG GCGTGACCGA TAAAGCCGGC
CTGGCGGATG AGAAAGGCAA ATTCCCGCGC ATGAAGCAGG CGCTGTTTGT TGATAGTATC
TCTTCCGTCA CTGGCGCATT TGTCGGAACC TCTTCTGTGA CCGCTTATAT TGAATCGTCT
TCCGGCGTTT CGGTGGGCGG TCGCACCGGT TTGACGGCGG TAGTGGTCGG TATTTTGTTC
CTGCTGGTTA TCTTCCTGTC GCCGCTGGCG GGCATGGTGC CGCCTTACGC GGCGGCGGGC
GCGCTGATTT ACGTCGGCGT GCTGATGACC TCCAGCCTGG CGCGGGTAAA CTGGCAGGAT
TTAACCGAAT CGGTCCCGGC GTTTATTACG GCGGTAATGA TGCCGTTTAG CTTCTCGATC
ACCGAAGGTA TCGCGCTGGG CTTTATCTCT TACTGCGTGA TGAAAATCGG TACCGGTCGC
CTGCGCGACC TTAGCCCGTG CGTAGTGATT GTCGCGCTGT TATTTGTGCT GAAGATTGTG
TTTATTGACG CACACTGA
 
Protein sequence
MSQQHTTQAS GQGMLERVFK LREHGTTART EVIAGFTTFL TMVYIVFVNP QILGVAGMDT 
SAVFVTTCLI AAFGSILMGL FANLPVALAP AMGLNAFFAF VVVQAMGLPW QVGMGAIFWG
AVGLLLLTIF RVRYWMIANI PVSLRVGITS GIGLFIGMMG LKNAGVIVAN PETLVSIGNL
TSHSVLLGVL GFFIIAILAS RNIHAAVLVS IIVTTLLGWI MGDVHYNGIV SAPPSVTSVV
GHVDLAGSFN LGLAGVIFSF MLVNLFDSSG TLIGVTDKAG LADEKGKFPR MKQALFVDSI
SSVTGAFVGT SSVTAYIESS SGVSVGGRTG LTAVVVGILF LLVIFLSPLA GMVPPYAAAG
ALIYVGVLMT SSLARVNWQD LTESVPAFIT AVMMPFSFSI TEGIALGFIS YCVMKIGTGR
LRDLSPCVVI VALLFVLKIV FIDAH