Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3988 |
Symbol | tdh |
ID | 6485288 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3875320 |
End bp | 3876345 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642739248 |
Product | L-threonine 3-dehydrogenase |
Protein accession | YP_002042958 |
Protein GI | 194443916 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 70 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCGT TATCCAAACT GAAAGCGGAA GAGGGCATCT GGATGACCGA CGTTCCGGAA CCGGAAGTCG GCCATAACGA TTTGCTGATT AAAATCCGTA AAACAGCCAT CTGCGGCACT GACGTTCACA TCTATAACTG GGATGACTGG TCGCAAAAAA CCATCCCGGT TCCGATGGTC GTGGGGCATG AATATGTCGG CGAAGTGGTC GGCATCGGTC AGGAAGTGAA AGGCTTTAAA ATCGGCGATC GCGTCTCCGG CGAAGGTCAT ATCACCTGTG GTCATTGCCG CAACTGCCGT GGTGGTCGTA CTCACCTGTG TCGCAACACC ACCGGCGTGG GCGTCAACCG TCCCGGCTGC TTCGCGGAAT ATCTGGTCAT CCCGGCGTTC AATGCGTTTA AAATCCCGGA TAACATTTCT GATGATTTAG CCTCTATTTT CGACCCGTTT GGTAATGCGG TGCATACGGC GCTGTCTTTC GATCTGGTCG GCGAAGATGT ACTGGTATCG GGGGCGGGGC CAATCGGCGT AATGGCCGCC GCGGTGGCGA AACATGTTGG CGCGCGTCAT GTGGTGATTA CTGACGTCAA TGAATACCGT CTGGAGCTGG CGCGCAAAAT GGGCGTCACC CGCGCGGTCA ACGTCGCGAA AGAGAGCCTG AACGACGTCA TGGCGGAGCT GGGAATGACC GAAGGGTTCG ATGTGGGTCT GGAGATGTCC GGCGCGCCGC CGGCGTTTCG TACCATGCTG GACACCATGA ATCACGGCGG TCGTATTGCG ATGCTGGGGA TTCCGCCATC AGATATGTCT ATCGACTGGA CAAAAGTCAT CTTTAAGGGC TTGTTCATTA AAGGTATTTA TGGTCGTGAG ATGTTCGAAA CGTGGTACAA AATGGCGGCG CTGATCCAGT CCGGTCTGGA TCTGTCACCG ATTATCACCC ATCGTTTCTC TATTGATGAT TTCCAGAAAG GTTTTGATGC CATGCGTTCA GGCCAGTCAG GAAAAGTTAT TCTGAGCTGG GATTAA
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Protein sequence | MKALSKLKAE EGIWMTDVPE PEVGHNDLLI KIRKTAICGT DVHIYNWDDW SQKTIPVPMV VGHEYVGEVV GIGQEVKGFK IGDRVSGEGH ITCGHCRNCR GGRTHLCRNT TGVGVNRPGC FAEYLVIPAF NAFKIPDNIS DDLASIFDPF GNAVHTALSF DLVGEDVLVS GAGPIGVMAA AVAKHVGARH VVITDVNEYR LELARKMGVT RAVNVAKESL NDVMAELGMT EGFDVGLEMS GAPPAFRTML DTMNHGGRIA MLGIPPSDMS IDWTKVIFKG LFIKGIYGRE MFETWYKMAA LIQSGLDLSP IITHRFSIDD FQKGFDAMRS GQSGKVILSW D
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