Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3963 |
Symbol | |
ID | 6483249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 3847748 |
End bp | 3849664 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642739223 |
Product | PTS system mannitol-specific transporter subunit EIICBA |
Protein accession | YP_002042933 |
Protein GI | 194442311 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2213] Phosphotransferase system, mannitol-specific IIBC component [COG4668] Mannitol/fructose-specific phosphotransferase system, IIA domain |
TIGRFAM ID | [TIGR00851] PTS system, mannitol-specific IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.303673 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 0.484856 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCCG ATATTAAGAT CAAAGTGCAA AGCTTTGGTC GATTCCTCAG CAATATGGTG ATGCCTAATA TCGGCGCGTT TATCGCGTGG GGTATTATCA CCGCATTATT TATTCCAACA GGGTGGTTGC CTAACGAAAC GCTGGCGAAA CTGGTTGGTC CGATGATCAC CTACCTGCTG CCGCTGCTCA TCGGTTATAC CGGCGGTCGT CTGGTTGGCG GCGAACGCGG CGGCGTAGTG GGCGCTATCA CTACCATGGG CGTTATTGTC GGCGCGGATA TGCCGATGTT CCTCGGCTCG ATGATCGCCG GTCCATTAGG CGGCTACTGC ATTAAGAAAT TCGACAGTTG GGTAGACGGT AAGATCAAAT CCGGTTTTGA GATGCTGGTG AACAACTTCT CCGCTGGCAT CATCGGTATG ATCCTCGCCA TCCTGGCGTT CCTCGGTATT GGTCCGGCGG TTGAAGTCCT GTCCAAAATT CTGGCGGCGG GCGTTAACTT CATGGTGGCG CACGATATGC TGCCGCTGGC GTCCATTTTT GTTGAACCGG CGAAAATCCT GTTCCTCAAT AACGCGATTA ACCACGGCAT CTTCTCACCG CTGGGTATCC AGCAGTCCCA TGAGATGGGT AAATCCATCT TCTTCCTGAT TGAAGCTAAC CCGGGTCCGG GGATGGGCGT CCTGCTGGCG TACATGTTCT TCGGTCGCGG CAGCGCTAAA CAGTCTGCGG GCGGCGCGGC GATTATCCAC TTCCTGGGCG GTATCCACGA AATTTACTTC CCGTACGTGC TGATGAACCC ACGTCTGATC CTGGCCGTTA TCCTTGGCGG TATGACTGGC GTATTCACCC TGACCATCCT GAACGGCGGT CTGGTTTCTC CGGCTTCTCC TGGTTCCATT CTGGCCGTAC TGGCGATGAC GCCAAAAGGC GCTTACTTCG CTAACATCGC TGCCATCGTG GCGGCAATGG CGGTCTCCTT CGTGGTTTCT GCAATTCTGC TGAAAACCAG CAAAGTGAAA GAAGAAGATG ACATTGAAGC GGCCACCCGT CGTATGCATG ACATGAAAGC GGAATCTAAA GGCGCCTCTC CGCTGGCGGC TGGCGACGTG ACCAACGACC TGAGCCATGT GCGTAAAATC ATCGTGGCTT GCGATGCCGG TATGGGTTCC AGCGCGATGG GCGCAGGGGT ACTGCGTAAG AAAGTACAGG ATGCGGGCCT GAGCCAGATC TCCGTCACCA ACAGCGCCAT TAACAATCTG CCGCCGGATG TGGATCTGGT CATTACTCAC CGTGACCTTA CCGAGCGCGC GATGCGTCAG GTACCGCAGG CGCAGCATAT TTCGCTGACC AACTTCCTGG ATAGCGGCCT GTACACCAGC CTGACCGAAC GTCTGGTTGC CGCACAGCGC CACAATACTA ATGAAGAGAA AGTACGCGAC CATCTGAAAG ACAGCTTTGA GGAGGGTGAT AACAACCTGT TCAAACTGGG TGCGGAGAAT ATCTTCCTGG GCCGTAAAGC CGCTAACAAA GAAGAGGCGA TTCGCTTTGC CGGTGAACAA CTGGTGAAAG GCGGCTATGT TGAGCCGGAA TACGTCGAAG CGATGCTGGA CCGCGAAAAG CTGACGCCGA CTTACCTCGG TGAATCCATC GCAGTTCCGC ACGGCACGGT GGAAGCTAAA GATCGCGTGC TGAAAACCGG CGTGGTGTTC TGCCAGTATC CGGAAGGCGT ACGCTTCGGT GAAGAAGAAG ACGATATTGC CCGTCTGGTC ATTGGTATCG CCGCACGTAA CAATGAGCAC ATCCAGGTCA TCACTAGCCT GACCAACGCG CTGGATGATG AATCCGTGAT CGAACGTCTG GCGCACACCA CCAGCGTGGA TGAAGTGCTG GAACTGCTGG CAGGTAAAAA AGCTTAA
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Protein sequence | MSSDIKIKVQ SFGRFLSNMV MPNIGAFIAW GIITALFIPT GWLPNETLAK LVGPMITYLL PLLIGYTGGR LVGGERGGVV GAITTMGVIV GADMPMFLGS MIAGPLGGYC IKKFDSWVDG KIKSGFEMLV NNFSAGIIGM ILAILAFLGI GPAVEVLSKI LAAGVNFMVA HDMLPLASIF VEPAKILFLN NAINHGIFSP LGIQQSHEMG KSIFFLIEAN PGPGMGVLLA YMFFGRGSAK QSAGGAAIIH FLGGIHEIYF PYVLMNPRLI LAVILGGMTG VFTLTILNGG LVSPASPGSI LAVLAMTPKG AYFANIAAIV AAMAVSFVVS AILLKTSKVK EEDDIEAATR RMHDMKAESK GASPLAAGDV TNDLSHVRKI IVACDAGMGS SAMGAGVLRK KVQDAGLSQI SVTNSAINNL PPDVDLVITH RDLTERAMRQ VPQAQHISLT NFLDSGLYTS LTERLVAAQR HNTNEEKVRD HLKDSFEEGD NNLFKLGAEN IFLGRKAANK EEAIRFAGEQ LVKGGYVEPE YVEAMLDREK LTPTYLGESI AVPHGTVEAK DRVLKTGVVF CQYPEGVRFG EEEDDIARLV IGIAARNNEH IQVITSLTNA LDDESVIERL AHTTSVDEVL ELLAGKKA
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