| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3960 |
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| Symbol | selB |
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| ID | 6485901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3843327 |
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| End bp | 3845177 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642739220 |
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| Product | selenocysteinyl-tRNA-specific translation factor |
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| Protein accession | YP_002042930 |
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| Protein GI | 194444443 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.293877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.449434 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTATTG CAACTGCCGG ACACGTAGAC CACGGTAAAA CGACGTTGCT CCAGGCGATT
ACCGGGGTCA ATGCCGATCG CCTGCCGGAA GAGAAAAAAC GCGGGATGAC TATCGATCTG
GGCTACGCCT ATTGGCCGCA GCCGGATGGT CGTGTGCTGG GCTTTATCGA TGTGCCTGGA
CATGAAAAAT TCCTCTCTAA CATGCTGGCG GGCGTAGGCG GTATCGATCA CGCTTTGCTG
GTGGTCGCCT GTGATGACGG CGTCATGGCG CAAACGCGCG AGCATTTACA GATCCTGCAA
CTGACGGGCA ATCTCCAGCT CACCGTCGCG CTGACCAAAG CCGATCGCGT GGACGAGGCG
CGTATCGGTG AAGTACGTGA AGAGGTACTG GCGGCGCTCG ACAACTATGG CTTCGCCGAT
ACCGTTTTAT TTGTCACCGC CGCCAATGAA GGACGCGGTA TTGCAGAACT TCGCGCTCAT
TTACAGCAGC TTCCTGCACG TTTGCACGCC GCGCAGCATC GCTTCCGCCT GGCTATCGAC
CGTGCGTTTA CGGTGAAAGG GGCGGGACTG GTGGTGACCG GAACGGCGCT GAGCGGAGAG
GTAAACGTGG GCGATACGCT ATGGTTGACC GGCGTTAATA CGCCGATGCG CGTACGAAGT
CTACACGCGC AAAATCAGCC CACTGACCAT GCGTATGCCG GGCAACGTAT TGCGCTCAAT
ATTGCGGGCG ATGCGGAGAA GGAGCAGCTT AACCGCGGCG ACTGGCTGCT TTCCGATGCG
CCGGTGGGGG AGGCTTTTTC CCGGGTGATC GTTTCTCTGA CGCTTCATGC GCCGCTTTCC
CAATGGCAAC CGCTACATAT TCACCATGCC GCCAGCCATG TGACTGGTCG CGTCTCTTTG
CTGGAAGGCG GGCTGGCCGA GCTGATCTTT GATACGCCGT TGTGGCTGGC CGATAATGAC
AGACTGGTGC TGCGTGATAT TTCCGCACGT GCCACCCTTG CCGGCGCACG CGTGGTGACG
CTTAAGGCGC CGCGTCGCGG TAAACGTAAG CCAGATTATT TGCACTGGCT TTCAACGCTT
GCCGCCGCGC AGGACGATAG CGCGGCGTTG GCCATTCATC TGGAACGCGG CGCCGTCAAC
CTGCCGGATT TCGGTTGGGC GCGTCAGCTT AATCCTCTCG GTATGCGTCA GCTTATTGAG
CAACATGGTT TTATCCAGGC CGGAGACAAT CTGTTAAGCG CGCCCGTCGC CGCCCGCTGG
CAGCGTAAGA TTCTTGATAC GCTGGCGACC TACCACGAAC AGCACCGCGA TGAACCGGGG
CCGGGACGCG AGCGTTTACG CCGCATGGCC CTGCCGATGG AGGATGAAGC GCTGGTTCTG
ATGCTGATCG AGCGGATGCG CGACGACGGC CTGATTCATA GCCATCACGG TTGGTTGCAT
CTGCCGGATC ATAAAGCAGG ATTTAGCGAT GAGCAGCAGG CCGTCTGGCA AAAAGTCGAA
CCGCTATTTG GCGATGAGCC CTGGTGGGTA CGCGATCTGG CGAAAGAGAC CGGAACGGAA
GAACAATTGA TGCGGCTGGT GCTGCGGCAG GCGGCACAGC AAGGCATCAT TACCGCGATC
GTAAAAGATC GGTACTATCG TAACGATCGG ATTGTCGCTT TCGCCAATAT GATCCGCGAG
CTGGATCAAG AGAGAGGATC AACGTGTGCG GCGGATTTTC GCGACAGGCT GAATGTAGGG
CGGAAACTGG CCATTCAGAT CCTTGAATAT TTTGACCGGA TTGGATTTAC ACGACGTCGT
GGGAATGATC ATTTATTACG TGATGCGTTA TTATTTCCGC AAAAAGAATG A
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| Protein sequence | MIIATAGHVD HGKTTLLQAI TGVNADRLPE EKKRGMTIDL GYAYWPQPDG RVLGFIDVPG
HEKFLSNMLA GVGGIDHALL VVACDDGVMA QTREHLQILQ LTGNLQLTVA LTKADRVDEA
RIGEVREEVL AALDNYGFAD TVLFVTAANE GRGIAELRAH LQQLPARLHA AQHRFRLAID
RAFTVKGAGL VVTGTALSGE VNVGDTLWLT GVNTPMRVRS LHAQNQPTDH AYAGQRIALN
IAGDAEKEQL NRGDWLLSDA PVGEAFSRVI VSLTLHAPLS QWQPLHIHHA ASHVTGRVSL
LEGGLAELIF DTPLWLADND RLVLRDISAR ATLAGARVVT LKAPRRGKRK PDYLHWLSTL
AAAQDDSAAL AIHLERGAVN LPDFGWARQL NPLGMRQLIE QHGFIQAGDN LLSAPVAARW
QRKILDTLAT YHEQHRDEPG PGRERLRRMA LPMEDEALVL MLIERMRDDG LIHSHHGWLH
LPDHKAGFSD EQQAVWQKVE PLFGDEPWWV RDLAKETGTE EQLMRLVLRQ AAQQGIITAI
VKDRYYRNDR IVAFANMIRE LDQERGSTCA ADFRDRLNVG RKLAIQILEY FDRIGFTRRR
GNDHLLRDAL LFPQKE
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