Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3220 |
Symbol | recB |
ID | 6484324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3130446 |
End bp | 3133991 |
Gene Length | 3546 bp |
Protein Length | 1181 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642738520 |
Product | exonuclease V subunit beta |
Protein accession | YP_002042242 |
Protein GI | 194444795 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 73 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGATG TCGCCGAGAC TCTTGATCCT CTGCGCTTGC CCCTTACAGG CGAGCGTTTG ATTGAAGCAT CAGCGGGCAC AGGCAAAACG TTTACTATCG CGGCGCTGTA TCTGCGGTTA TTGCTCGGCC TGGGCGGCAG TGCCGCATTT CCCCGCCCGT TGACCGTTGA AGAACTGCTG GTGGTAACCT TTACGGAGGC CGCCACTGAA GAGCTGCGTG GGCGAATCCG CAGTAATATC CATGAGTTGC GCATCGCCTG TCTGCGGGAA AGCACGGATA ATCCGCTTTA TGCCCGCTTG CTGGAAGAAA TTAGCGACAA AAAGCAGGCC GCACAGTGGT TATTACTGGC GGAACGACAA ATGGACGAGG CCGCGGTTTT TACCATCCAC GGTTTTTGCC AGCGTATGCT CAGCCTGAAC GCTTTCGAAT CCGGTATGTT GTTTGAGCAA CAGCTTATTG AAGACGAATC TTTGTTGCGT TATCAGGCCT GCGCCGATTT CTGGCGGCGT CATTGCTATC CGCTGCCGCG CGACATCGCG CAGGTGGTGT TTGACGTGTG GAAGGGACCG AAGGCGCTCT TAAAGGATAT CGATCGTTAT CTGCAGGGCG AAGCGCCGGT CATTAAAGCG CCGCCATCGC AGGAGGAGAC GCTGGCATCG CGTCATGAAC AGATCCTGGC GCGCATCAAC CAGGTGAAGC AGCAGTGGTG TGAGGCGGTT AGCGAGCTGG ACGCGCTGAT CGAATCATCC GGCATCGATC GCAGAAAGTT CAACCGCGGC AATCAGGCGA AATGGATCGA AAAGATCACC GCGTGGGCGC AAGAAGAGAC GAAAAACTAT CAATTACCCG AGGCGTTGGG AAAATTTTCA CAGCGTTTTT TAGCTGAGCG CACCAAAGCT GGCGGCGTGA CGCCCCAGCA CCCATTGTTT GTCGCCATTG ATAACCTGTT GGGCGAACCG CTATCGATTA AAGATCTGGT TCTTACCCGA GCGCTATCAG AGATCCGTGA AACGGTGGCT CAGGAAAAAC GCCGGCGCGG CGAGCTGGGG TTTGACGATA TGCTCAGCCG TTTAGATACC GCGCTGCGTA GTGAAAGCGG CGAGGCGCTG GCTGCGGCGA TTCGTACCCG TTTTCCGGTG GCGATGATCG ATGAATTTCA GGATACCGAC CCACAGCAGT ACCGTATTTT TCGCCGTATC TGGCGACATC AACCCGATAC GGCGCTATTG CTGATTGGCG ATCCTAAACA GGCGATTTAT GCGTTTCGTG GCGCGGATAT CTTTACCTAC ATGAAGGCTC GCAGCGAAGT GAGCGCGCAC TATACCCTTG ACACTAACTG GCGCTCCGCG CCGGGGATGG TGAATAGCGT TAACAAGCTG TTCAGTCAGA TGAATGACAC CTTTATGTTC CGCGATATTC CCTTCAGTCC GGTAAAGTTT GCGCCCAGAA ACCAGTCGCT GCAATTTAAA GTGAATGACG CGCCTCAACC GGCGATGACC CTGTGGCTAA TGGAGGGAGA AAGCTGCGGT TCGGGCGATT ATCAAAGTTA TATGGCGCAG GTGTGCGCCA CACAAATTCG CGACTGGCTG CGTGCCGGGC AAACGGGCGA CGCGCTGCTG ACGAACGGCG ATTCGTCGCG GCCCGTTCGT GCCTCGGATA TCAGCGTGCT GGTGCGCAGC AGGCGGGAAG CCGCGCTGAT ACGGGATGCG CTGACCTTAC TGGCGATCCC CTCCGTCTAT CTTTCTAACC GCGACAGCGT ATTCGAAACG CTCGAAGCGC AGGAAATGCT GTGGGTGTTG CAGGCGGTGA TGGCGCCCGA ACGTGAGAAT ACGCTGCGTA GCGCTCTGGC GACATCAATG ATGGGCCTTA CCGCGCTGGA TATCGAAACG CTTAACAATG ATGAAAATGC GTGGGATGCG GTTGTCGAAG AGTTTGATGG CTACCGACAG ATTTGGCATA AACGCGGCGT GATGCCTATG CTGCGCGCGC TAATGTCGGC GCGCAATATT GCTGAAAACC TGCTGGCGAC GGCGGGAGGC GAACGTCGGC TGACGGATAT TTTGCATATT AGCGAGCTGT TACAGGAAGC CGGTTCGCAG CTGGAAAGCG AACATGCGCT GGTGCGTTGG CTGGCGCAGC ATATCCTTGA ACCCGATAGC AATGCTTCCA GCCAGCAACT ACGTCTGGAA AGCGATAAGC ATCTGGTGCA AATCGTCACC ATTCATAAAT CGAAAGGTCT GGAATACCCG CTGGTCTGGT TACCTTTTAT CACCCATTTC CGCGTGCAGG ACCAGGCTTT TTATCACGAC AGGCACTCCT ACGAGGCGGT GCTGGACCTT AGTCACGCCG AAGAGAGCGT AGCACTGGCG GAAGCCGAGC GCCTGGCGGA AGACCTGCGC CTACTTTATG TCGCGCTGAC CCGTGCTGTG TGGCATTGCA GCCTCGGCGT CGCGCCGCTG GTACGGCGTC GCAGCGATAA GAAAGGCGAG ACGGATGTGC ACCAAAGCGC GCTTGGGCGA CTCCTGCAAA AAGGCGAACC GATGGATGCC GCAGGCCTTC GCGCCTGTAT TGAGGCGCTA TGCGACGAGG ATATCGTGTG TCGAACGCCA GGCAATACGG ATAACGACCG CTGGCAAATT GCCGCTGCCT CGCACGCGGA ACTCAGTGCC AGAACGCTGC AACGCCTGCT TTATGATAGC TGGCGCGTCA CCAGTTATTC CGGTTTGCAG CAGCGGGGAC ATAGCGTGGC GCAAGATCTT ATTCCTCGTC TCGACATTGA CGCCGCAGGC GTTGGCGAAG CGGCGGAAGC GCCGGCAATG ACGCCGCATC ACTTTCCTCG CGGGGCATCG CCGGGAACAT TTTTGCACAA CCTGTTTGAA GAGCTTGATT TTACTCAACC GATAAACCCC CAATGGGTAC AGGAAAAACT GGAGCTGAGT GGTTTTGAGA CGCGATGGGA GCCCGTACTT ACCCGCTGGC TGGACACCGT GTTGCACGTT CCCCTTAACG AGACGGGCGT TAGTCTGAGC GTGCTGACCG AGCGTGAAAA ACAGGTCGAA ATGGAGTTTT ATCTGCCGAT TGCCCAGCCG CTTACCGCCG GAGAGCTGGA TGCGTTGATT CGTCGGTACG ACCCGCTTTC AGCAGGTTGC CCTGCGCTGG ATTTCATGCA GGTTCGCGGC ATGTTAAAGG GCTTTATCGA CCTGGTGTTC CGTTATGAGG GGCGCTATTA CCTGCTCGAC TATAAATCTA ACTGGCTGGG CGAGGATAGC GCCGCTTATA CCCAGACGGC GATGGCTGCG GCGATGCAGG CGCATCGCTA TGATTTGCAG TACCAGCTTT ATACGCTGGC ATTGCACCGT TACCTTCGTC ATCGAATGGC GAATTACGAC TATGAACGCC ATTTCGGCGG CGTCATCTAT CTCTTTTTAC GCGGGGTGGA TAGCGAACGT CCGCAGCAGG GTATTTTTAC CACTCGCCCT GCGGCGGCGT TAATTAACCA ACTGGATGAT ATGTTTGCAG GTGAAATGAG TGAGGAGGCG CAATGA
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Protein sequence | MNDVAETLDP LRLPLTGERL IEASAGTGKT FTIAALYLRL LLGLGGSAAF PRPLTVEELL VVTFTEAATE ELRGRIRSNI HELRIACLRE STDNPLYARL LEEISDKKQA AQWLLLAERQ MDEAAVFTIH GFCQRMLSLN AFESGMLFEQ QLIEDESLLR YQACADFWRR HCYPLPRDIA QVVFDVWKGP KALLKDIDRY LQGEAPVIKA PPSQEETLAS RHEQILARIN QVKQQWCEAV SELDALIESS GIDRRKFNRG NQAKWIEKIT AWAQEETKNY QLPEALGKFS QRFLAERTKA GGVTPQHPLF VAIDNLLGEP LSIKDLVLTR ALSEIRETVA QEKRRRGELG FDDMLSRLDT ALRSESGEAL AAAIRTRFPV AMIDEFQDTD PQQYRIFRRI WRHQPDTALL LIGDPKQAIY AFRGADIFTY MKARSEVSAH YTLDTNWRSA PGMVNSVNKL FSQMNDTFMF RDIPFSPVKF APRNQSLQFK VNDAPQPAMT LWLMEGESCG SGDYQSYMAQ VCATQIRDWL RAGQTGDALL TNGDSSRPVR ASDISVLVRS RREAALIRDA LTLLAIPSVY LSNRDSVFET LEAQEMLWVL QAVMAPEREN TLRSALATSM MGLTALDIET LNNDENAWDA VVEEFDGYRQ IWHKRGVMPM LRALMSARNI AENLLATAGG ERRLTDILHI SELLQEAGSQ LESEHALVRW LAQHILEPDS NASSQQLRLE SDKHLVQIVT IHKSKGLEYP LVWLPFITHF RVQDQAFYHD RHSYEAVLDL SHAEESVALA EAERLAEDLR LLYVALTRAV WHCSLGVAPL VRRRSDKKGE TDVHQSALGR LLQKGEPMDA AGLRACIEAL CDEDIVCRTP GNTDNDRWQI AAASHAELSA RTLQRLLYDS WRVTSYSGLQ QRGHSVAQDL IPRLDIDAAG VGEAAEAPAM TPHHFPRGAS PGTFLHNLFE ELDFTQPINP QWVQEKLELS GFETRWEPVL TRWLDTVLHV PLNETGVSLS VLTEREKQVE MEFYLPIAQP LTAGELDALI RRYDPLSAGC PALDFMQVRG MLKGFIDLVF RYEGRYYLLD YKSNWLGEDS AAYTQTAMAA AMQAHRYDLQ YQLYTLALHR YLRHRMANYD YERHFGGVIY LFLRGVDSER PQQGIFTTRP AAALINQLDD MFAGEMSEEA Q
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