Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A3182 |
Symbol | |
ID | 6484281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 3094878 |
End bp | 3096218 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642738487 |
Product | glucarate dehydratase |
Protein accession | YP_002042211 |
Protein GI | 194443896 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | [TIGR03247] glucarate dehydratase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.475312 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 0.651115 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTACTC AATTTACGAC GCCTGTAGTG ACTGAAATGC AGGTTATCCC GGTTGCGGGT CATGACAGTA TGCTGATGAA CCTGAGCGGC GCGCACGCCC CGTTCTTCAC GCGCAACATC GTCATTATTA AAGATAACTC CGGCCATACC GGGGTCGGCG AGATTCCGGG CGGCGAAAAA ATTCGCAAAA CGCTGGAAGA TGCGATCCCA CTGGTGGTGG GAAAAACGCT GGGTGAATAT AAAAATGTCC TGACCGCCGT TCGCAACCAG TTTGCCGATC GCGATGCGGG CGGACGCGGT TTACAAACAT TCGATCTCCG TACCACTATC CATGTAGTGA CTGGCATTGA AGCGGCAATG CTTGACCTTT TGGGCCAACA CCTGGGCGTC AACGTCGCTT CGCTGTTAGG CGACGGTCAG CAGCGCAGCG AAGTCGAAAT GCTGGGTTAT CTGTTCTTTG TCGGCAATCG CAAGGCTACG CCGCTGCCGT ATCAGAGCCA GCCGGATGAG CAATGCGACT GGTATCGTCT GCGCCATGAA GAGGCGATGA CGCCGGAAAC GGTAGTGCGT CTGGCGGAAG CGGCCTATGA AAAATACGGC TTCAACGACT TCAAACTGAA AGGCGGCGTG CTGGCGGGCG AAGAAGAGGC CGAGTCAATA GTAGCGCTGG CGAAACGTTT CCCACAAGCG CGCGTCACGC TCGATCCAAA CGGTGCCTGG TCGCTGAACG AAGCGATCAG CATTGGTAAA TACCTGAAAG GTTCTCTGGC CTATGCAGAA GATCCGTGTG GCGCGGAACA GGGTTTTTCC GGGCGTGAAG TGATGGCGGA ATTCCGTCGC GCGACCGGAT TACCGACGGC CACCAATATG ATAGCGACCG ACTGGCGTCA AATGGGGCAT ACGCTGTCGC TGCAATCCGT CGATATCCCG CTGGCGGACC CGCACTTCTG GACTATGCAA GGCTCTGTAC GCGTGGCGCA AATGTGTCAT GAGTTCGGTC TGACCTGGGG CTCGCACTCT AACAACCACT TTGATATTTC GTTGGCGATG TTTACCCATG TTGCCGCGGC GGCGCCGGGC AAGATCACCG CGATCGATAC CCACTGGATC TGGCAGGAAG GCAACCAACG TCTGACTAAA GAACCGTTTG AAATTAAAGG CGGCATGGTG CAAGTACCGA CCAAACCGGG GCTGGGCGTT GAGCTCGATA TGGATCAGGT GATGAAAGCG CATGAGCTCT ATCAAAAACA TGGCTTAGGC GCGCGTGACG ACGCGATGGG AATGCAGTAC TTAATTCCTG GCTGGACGTT TGATAATAAG CGTCCTTGCA TGGTGCGTTA A
|
Protein sequence | MSTQFTTPVV TEMQVIPVAG HDSMLMNLSG AHAPFFTRNI VIIKDNSGHT GVGEIPGGEK IRKTLEDAIP LVVGKTLGEY KNVLTAVRNQ FADRDAGGRG LQTFDLRTTI HVVTGIEAAM LDLLGQHLGV NVASLLGDGQ QRSEVEMLGY LFFVGNRKAT PLPYQSQPDE QCDWYRLRHE EAMTPETVVR LAEAAYEKYG FNDFKLKGGV LAGEEEAESI VALAKRFPQA RVTLDPNGAW SLNEAISIGK YLKGSLAYAE DPCGAEQGFS GREVMAEFRR ATGLPTATNM IATDWRQMGH TLSLQSVDIP LADPHFWTMQ GSVRVAQMCH EFGLTWGSHS NNHFDISLAM FTHVAAAAPG KITAIDTHWI WQEGNQRLTK EPFEIKGGMV QVPTKPGLGV ELDMDQVMKA HELYQKHGLG ARDDAMGMQY LIPGWTFDNK RPCMVR
|
| |