| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3134 |
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| Symbol | truD |
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| ID | 6486423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3047468 |
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| End bp | 3048517 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642738445 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_002042169 |
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| Protein GI | 194443285 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.0800342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAGT TTGACAATCT CACCTGGCTG CACGGAAAAC CACAAGGTAG CGGATTGCTG
AAAGCGAATC CGGAAGATTT TGTGGTGGTC GAAGATTTAG GCTTTACGCC GGATGGTGAA
GGCGAGCACA TTCTGCTGCG TATTTTGAAA AACGGTTGCA ATACCCGTTT TGTCGCTGAC
GCGCTGGCGA AATTCCTGAA AATTCACGCT CGCGAAGTGA GCTTTGCCGG GCAAAAAGAT
AAACACGCCG TTACCGAGCA GTGGCTGTGC GCGCGCGTGC CGGGGAAAGA GATGCCCGAT
TTCAGCGCCT TTCAGCTGGA AGGTTGTAAA GTGCTGGAAT ACGCGCGTCA CAAGCGTAAG
CTGCGTTTAG GCGCGCTGAA AGGCAATGCC TTTACTCTGG TGTTGCGTGA AATAAGCGAT
CGCCGCGATG TCGAAACACG ATTGCAGGCG ATTCGCGATG GCGGCGTGCC GAACTATTTT
GGTGCACAGC GATTCGGCAT TGGCGGCAGC AACTTGCAGG GCGCGCTGCA CTGGGCGCAA
AGTAACGCGC CGGTGCGCGA TCGCAATAAA CGCAGTTTTT GGTTGTCGGC GGCACGTAGC
GCGTTGTTTA ATCAAATTGT TCACCAGCGG CTGAAGAAAC CAGACTTTAA TCAAGTTGTT
GACGGCGATG CGCTACAATT AGCGGGGCGT GGAAGCTGGT TCGTCGCGAC ATCTGAAGAA
CTGCCTGAAT TGCAGCGCCG GGTAGACGAA AAAGAGCTGA TGATTACAGC GTCGTTGCCG
GGCAGCGGAG AGTGGGGAAC ACAGCGTGCG GCGCTGGCGT TTGAGCAAGA TGCCATTGCC
CAGGAAACGG TGTTGCAATC GCTGTTGCTG CGCGAAAAAG TAGAGGCGTC GCGCAGAGCG
ATGCTGCTTT ATCCGCAACA ATTAAGCTGG AACTGGTGGG ATGACGTTAC CGTCGAGTTA
CGTTTCTGGC TGCCCGCAGG CAGTTTTGCC ACCAGCGTAG TAAGGGAACT GATCAACACA
ATGGGTGATT ATGCGCATAT TGCTGAGTAA
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| Protein sequence | MTEFDNLTWL HGKPQGSGLL KANPEDFVVV EDLGFTPDGE GEHILLRILK NGCNTRFVAD
ALAKFLKIHA REVSFAGQKD KHAVTEQWLC ARVPGKEMPD FSAFQLEGCK VLEYARHKRK
LRLGALKGNA FTLVLREISD RRDVETRLQA IRDGGVPNYF GAQRFGIGGS NLQGALHWAQ
SNAPVRDRNK RSFWLSAARS ALFNQIVHQR LKKPDFNQVV DGDALQLAGR GSWFVATSEE
LPELQRRVDE KELMITASLP GSGEWGTQRA ALAFEQDAIA QETVLQSLLL REKVEASRRA
MLLYPQQLSW NWWDDVTVEL RFWLPAGSFA TSVVRELINT MGDYAHIAE
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