| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A3129 |
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| Symbol | rpoS |
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| ID | 6486026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 3043742 |
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| End bp | 3044734 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642738441 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_002042165 |
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| Protein GI | 194442500 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 0.109042 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTCAGA ATACGCTGAA AGTTCATGAT TTAAATGAAG ACGCGGAATT TGATGAGAAC
GGAGTAGAGG CTTTTGACGA AAAAGCCTTG AGTGAAGAGG AACCCAGTGA TAACGACCTG
GCTGAAGAAG AGCTGTTATC GCAAGGGGCC ACACAGCGTG TGTTGGACGC GACTCAGCTT
TACCTTGGTG AGATTGGGTA TTCACCACTG TTAACAGCCG AAGAAGAAGT CTATTTTGCG
CGTCGCGCAC TGCGTGGAGA TGTCGCTTCT CGCCGTCGCA TGATTGAGAG TAACCTGCGT
CTGGTGGTAA AAATTGCCCG CCGTTATGGC AATCGTGGAC TGGCGTTGCT GGACCTGATT
GAAGAGGGCA ACCTGGGGCT TATCCGTGCA GTCGAGAAGT TTGACCCGGA ACGCGGGTTC
CGCTTCTCAA CATACGCAAC CTGGTGGATT CGCCAGACAA TCGAACGGGC GATTATGAAC
CAAACCCGTA CGATTCGCTT GCCGATTCAC ATTGTTAAAG AGCTGAACGT ATACCTGCGC
ACCGCACGTG AGTTGTCGCA TAAACTGGAC CACGAACCGA GTGCGGAAGA AATTGCAGAG
CAACTGGATA AACCGGTTGA TGACGTCAGC CGTATGCTTC GTCTCAACGA GCGCATTACC
TCGGTAGACA CCCCGCTGGG CGGTGATTCC GAAAAAGCGT TGCTGGACAT CCTGGCCGAT
GAAAAAGAGA ACGGTCCGGA AGACACCACG CAAGATGACG ATATGAAACA GAGCATCGTC
AAATGGTTGT TCGAACTGAA CGCCAAACAG CGTGAAGTGC TGGCGCGCCG TTTCGGTCTG
CTGGGATATG AAGCTGCGAC ACTGGAAGAT GTAGGCCGTG AAATCGGTCT TACGCGTGAA
CGTGTTCGTC AGATTCAGGT TGAAGGCCTG CGCCGTCTGC GCGAAATTCT GCAGACGCAG
GGGCTGAATA TCGAAGCGCT GTTCCGCGAG TAA
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| Protein sequence | MSQNTLKVHD LNEDAEFDEN GVEAFDEKAL SEEEPSDNDL AEEELLSQGA TQRVLDATQL
YLGEIGYSPL LTAEEEVYFA RRALRGDVAS RRRMIESNLR LVVKIARRYG NRGLALLDLI
EEGNLGLIRA VEKFDPERGF RFSTYATWWI RQTIERAIMN QTRTIRLPIH IVKELNVYLR
TARELSHKLD HEPSAEEIAE QLDKPVDDVS RMLRLNERIT SVDTPLGGDS EKALLDILAD
EKENGPEDTT QDDDMKQSIV KWLFELNAKQ REVLARRFGL LGYEAATLED VGREIGLTRE
RVRQIQVEGL RRLREILQTQ GLNIEALFRE
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