Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2906 |
Symbol | |
ID | 6482489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 2842680 |
End bp | 2844860 |
Gene Length | 2181 bp |
Protein Length | 726 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642738225 |
Product | protein secretion ABC efflux system permease and ATP-binding protein |
Protein accession | YP_002041954 |
Protein GI | 194446199 |
COG category | [V] Defense mechanisms |
COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.452451 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.0897932 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCGCG CCGCCCCCGA TGTAGAAGAG GTACTCAGTG AGCGCGCGCT AAGCCAATGG GCGCAGGCCA TCAGCTATGT CGCCGGTCAT TATCGCGTTG CCTGTTCTCC CGGTTCAATT CAGGCCAACG CCCCGTGGTT TAGGGGTAAA AGCAGAACGA CCGCCTTAAC GCAGCTCGCG CGGCAGGCGG GTTTATCCTT TCATGCGCCG GACATAGACA AAACGGCATT TAGTCAGTGG CGATTGCCGT TGGTTGTCGA GCTCCGGGAC GGGCTGTTAT TGGTTATCGA ACATGTTAAT GGCGAAGATG CGGTAGACGT TTTTGTGATT GAAGAAGAGG GTCAGCGTAA CCGCCTGACG CTCAGCGAGT TATTGCCGGA GATCCTCTAT GTTGCCGCGC TACGCCCGCT ATCGGCGCTC AAGGATAGCC GCGTCGACCG CTATATCTCC CGCTTTAAAC CCGACTGGAT GCGCGAGCTG GTTCTGCAGG ATATTCGCCC TTATTTACCG GTAATGGTCG CCGCCTTTCT GATTAACGTG CTGTCGCTGG CCGGGATTGT GTTCTCTATG CAGGTTTACG ATCGGGTGAT CCCCGCTCAG TCATATCCTA CCCTGTACGT GCTCTCCTTC GGCGTGCTGG TAGCGGTGCT GTTCGGTTTT CTGCTGCGTG AAGCGCGTAC GCACATTATG GACGTGCTCG GTAAACGCGC CGATATGCGC ATTTCCGATC GGGTATTCGG TCATGCGTTA AGGCTGCGCA ACAGCGCTAT TCCCCGTTCC ACAGGCAGTT TTATCTCGCA GTTACGCGAA CTGGAGCAGA TCCGCGAGAT GATTACCTCT TCAACGCTGG CGACCATTGT CGATCTGCCT TTCTTTTTCC TGTTTATGAT AGTCCTGGCG ATTATTGCCC CACCGCTGGC ATGGATAGCG CCCGTGGCGG CTCTGCTGAT GATCCTGCCG GGCGTCGCAC TGCAAAAAAA ACTGGCTGTC CTCGCCAACC AGGCCGCCCA CGAAGCGACG CTACGCAATG CAGTCTTGGT CGAAAGCGTT CAGGGGCTGG AAGATATTAA ACTGATGCAG GCGGAGAACC GCTTTCTTCA GCAATGGAAT AGCTATATCC GTATTACCGG CGAGTCGGGT CTACGCACCC GCAAACTCAC GCAAGGGCTT ATCAGTTGGG GGATGTCGGT ACAAAGTCTG GTGTATGCCG CAGTGATTAT GTTCGGCGCG CCGATGGTCA TTGAAGGCAG TATGACTACC GGCGCCGTGG TCGCCGCGTC GATGCTCGGC TCGCGGATGA TCGCGCCAAT GGCTAACCTG TGCGGCGTGC TGGCGCGCTG GCAGCAGGTG AAAGCGGCGA AGATGGGTCT CGACAACATT ATGCAACTGC CCACCGAGAC ACAGCATGAC GATAGCCTGA TACACCGCGA CATCCTCCAC GGGCATTACT TCTTTGAAAA CGCTCAGTTT CGTTACCATA ACGACGATCA ACGCATACCG TTGCGCCTCG TGCGTCTGGA GATCATGCCT GGCGAGCGGA TTGCGATACT GGGGCGTAAC GGTGCGGGTA AATCCACACT TTTACAGGCG ATGGCGGGCG GCCTGGAGAT GATTCAGGGA GATGCCCGGC TTGATAATCT CAGCTTGTCG CACATCGATA TGGCGGATTT ACGCCGCAAC ATCGGCTTTC TTAGCCAGAA CGCGCGGCTT TTCTTCGGCA CCCTACGAGA GAACCTGACG CTCGGCGCGC CGCACGCCAA CGATGAACAG ATTTTTGACG CGCTCGAAGT CAGCGGCGGC GCCGTCTTCG TCAGGCGGCT GGCAAAAGGG TTGGATCATC CCATTATGGA GGGTGGTAAC GGCCTGTCCG GCGGGCAGCG TCAGTCCCTG TTGCTGGCGA GAATGCTGCT GCGCTCCCCC AATATTGTGC TACTTGACGA ACCCAGCGCC TCGCTGGACG AGCATACGGA ACGAGAGTTT ATTCAGCGGT TACATCAGTG GCTTGGCAAT CGAACCCTGG TCGTCGCGAC GCACCGGGTA CCAATACTGG AGCTGGTTGA GCGTGTCGTT GTCCTGAAAG AAGGACAACT GGTGATGGAT GCGCCAAAAG CGCAGGCGCT TAACGCGGAT CGGATGCAAA GTCATCGTCG GGAGTGGAAA AATGAAAATC AATCAGCATG A
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Protein sequence | MTRAAPDVEE VLSERALSQW AQAISYVAGH YRVACSPGSI QANAPWFRGK SRTTALTQLA RQAGLSFHAP DIDKTAFSQW RLPLVVELRD GLLLVIEHVN GEDAVDVFVI EEEGQRNRLT LSELLPEILY VAALRPLSAL KDSRVDRYIS RFKPDWMREL VLQDIRPYLP VMVAAFLINV LSLAGIVFSM QVYDRVIPAQ SYPTLYVLSF GVLVAVLFGF LLREARTHIM DVLGKRADMR ISDRVFGHAL RLRNSAIPRS TGSFISQLRE LEQIREMITS STLATIVDLP FFFLFMIVLA IIAPPLAWIA PVAALLMILP GVALQKKLAV LANQAAHEAT LRNAVLVESV QGLEDIKLMQ AENRFLQQWN SYIRITGESG LRTRKLTQGL ISWGMSVQSL VYAAVIMFGA PMVIEGSMTT GAVVAASMLG SRMIAPMANL CGVLARWQQV KAAKMGLDNI MQLPTETQHD DSLIHRDILH GHYFFENAQF RYHNDDQRIP LRLVRLEIMP GERIAILGRN GAGKSTLLQA MAGGLEMIQG DARLDNLSLS HIDMADLRRN IGFLSQNARL FFGTLRENLT LGAPHANDEQ IFDALEVSGG AVFVRRLAKG LDHPIMEGGN GLSGGQRQSL LLARMLLRSP NIVLLDEPSA SLDEHTEREF IQRLHQWLGN RTLVVATHRV PILELVERVV VLKEGQLVMD APKAQALNAD RMQSHRREWK NENQSA
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