| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2852 |
|---|
| Symbol | nadB |
|---|
| ID | 6484313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 2782760 |
|---|
| End bp | 2784382 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642738175 |
|---|
| Product | L-aspartate oxidase |
|---|
| Protein accession | YP_002041908 |
|---|
| Protein GI | 194445710 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0029] Aspartate oxidase |
|---|
| TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.184893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 0.278605 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACAA CTCCTGAACT GTCCTGTGAT GTGTTAATTA TCGGCAGCGG CGCGGCCGGA
CTCTCGCTGG CGCTGCGTCT GGCTGAAAAA CATAAGGTTA TCGTCCTGAG TAAAGGGCTG
GTGAGCGAGG GCTCCACGTT TTATGCGCAG GGCGGTATTG CCGCCGTGTT TGATGAAACC
GACAGTATTG CGTCGCATGT CGAAGATACG CTGATTGCCG GCGCCGGAAT TTGTGATCGC
CACGCGGTGG AGTTTGTCGC CAGCAACGCC CGTACCTGCG TGCAGTGGCT TATCGATCAG
GGCGTGCTGT TTGATACGCA TGTCCAGCCA AACGGCAAGG AGAGCTATCA TCTCACGCGT
GAAGGCGGCC ATAGTCATCG CCGTATCCTT CATGCCGCCG ACGCTACCGG AAAGGAAGTC
GAAACCACAT TGGTCAGTCG GGCGCAAAAT CATCCTAATA TTCAGGTGCT GGAGCGCAGC
AACGCCGTTG ATTTAATTAT CTCCGATAAA ATGGGTCTGC CGGGGCCTCG CCGGGTCGTC
GGCGCCTGGA TCTGGAATCG CAATAAAGAA TGGGTTGAAA CCTGTCATGC GAAGTCGGTG
GTGCTGGCGA CCGGCGGCGC CTCAAAGGTG TATCAATATA CCACTAACCC GGATATTTCC
TCCGGTGACG GTATCGCGAT GGCCTGGCGC GCGGGCTGTC GGGTCGCTAA TCTGGAATTT
AACCAGTTTC ATCCCACCGC CCTTTATCAC CCGCAGGCGC GTAATTTTCT CCTTACCGAA
GCGCTGCGCG GCGAAGGCGC ATACCTTAAA CGTCCGGACG GTTCACGGTT TATGCCGGAC
GTTGACGAAC GCGGCGAACT GGCGCCGCGC GATATTGTCG CCCGCGCTAT TGATCATGAG
ATGAAACGAC TCGGCGCAGA CTGTATGTTT CTCGATATCA GCCACAAGCC TGACGATTTT
GTCCGCCAGC ACTTCCCGAT GATCTATGCG AAACTGCTCG ATTTGGGTAT GGATTTAACC
AAAGAACCGA TTCCCGTTGT TCCTGCCGCA CACTATACCT GCGGCGGCGT GGTCGTCGAT
GATTATGGTC GTACCGATGT AGACGGCTTA TATGCCATTG GCGAAGTCAG TTACACCGGC
CTGCACGGCG CTAACCGTAT GGCGTCCAAC TCGTTGCTGG AATGCTTAGT GTACGGCTGG
TCCGCAGCAA TGGATATCGA CAGGCGAATG CCTTCTGTCC ACAGCGTTGA CGTCCTTCCC
GCCTGGGATG AAAGCCGCGT GGAGAACGCC GATGAGCGGG TGGTGATTCA GCATAACTGG
CATGAACTGC GCCTGCTGAT GTGGGACTAT GTGGGGATTG TGCGCACGAC GAAACGGCTG
GAGCGCGCCC TACGGCGTAT TACCATGTTG CAACAAGAGA TTGACGAGTA TTACGCCAAC
TTTCGCGTCT CGAATAATTT ACTGGAGCTG CGCAATCTGG TGCAAGTGGC CGAACTGATT
GTGCGTTGCG CGATGATGCG TAAAGAGAGC CGGGGGCTGC ACTTTACGCT GGATTATCCG
CAACAACTGG CTGAATCAGG CCCATCGATC CTTTCGCCGT TAACGCCTCA CATAAACAGA
TAA
|
|---|
| Protein sequence | MMTTPELSCD VLIIGSGAAG LSLALRLAEK HKVIVLSKGL VSEGSTFYAQ GGIAAVFDET
DSIASHVEDT LIAGAGICDR HAVEFVASNA RTCVQWLIDQ GVLFDTHVQP NGKESYHLTR
EGGHSHRRIL HAADATGKEV ETTLVSRAQN HPNIQVLERS NAVDLIISDK MGLPGPRRVV
GAWIWNRNKE WVETCHAKSV VLATGGASKV YQYTTNPDIS SGDGIAMAWR AGCRVANLEF
NQFHPTALYH PQARNFLLTE ALRGEGAYLK RPDGSRFMPD VDERGELAPR DIVARAIDHE
MKRLGADCMF LDISHKPDDF VRQHFPMIYA KLLDLGMDLT KEPIPVVPAA HYTCGGVVVD
DYGRTDVDGL YAIGEVSYTG LHGANRMASN SLLECLVYGW SAAMDIDRRM PSVHSVDVLP
AWDESRVENA DERVVIQHNW HELRLLMWDY VGIVRTTKRL ERALRRITML QQEIDEYYAN
FRVSNNLLEL RNLVQVAELI VRCAMMRKES RGLHFTLDYP QQLAESGPSI LSPLTPHINR
|
|---|
| |