| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A2494 |
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| Symbol | menD |
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| ID | 6485660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 2417387 |
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| End bp | 2419057 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642737829 |
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| Product | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase |
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| Protein accession | YP_002041570 |
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| Protein GI | 194444822 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
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| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.28377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 81 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGTAA GTGCATTTAA CCGGCGCTGG GCGGCGGTCA TCCTGGAAGC CTTAACCCGT
CATGGCGTCA GGCATGTTTG TATCGCCCCT GGTTCCCGTT CCACGCCGCT CACGTTGGCG
GCGGCAGAGA ATCCTGCTTT TATTCACCAT ACGCACTTTG ATGAGCGTGG GCTTGGTCAT
CTGGCGTTAG GGCTGGCGAA AGTCAGCCAA CAGCCGGTTG CCGTTATTGT CACTTCAGGT
ACCGCCGTGG CGAACCTCTA TCCGGCGTTG ATTGAGGCGG GGCTGACGGG CGAGAAGCTC
ATTTTACTTA CCGCCGATCG CCCGCCGGAG CTGATTGACT GCGGCGCCAA CCAGGCGATC
CGTCAGGCGG GGATGTTTGC CTCGCACCCC TCCCAAACTT TGTCGTTGCC GCGTCCCACG
CAGGATATTC CGGCGCGCTG GCTGGTGTCG ACCATCGACA ATGCGCTCGC CATGCTTCAT
GCGGGCGCGC TGCACATTAA CTGTCCTTTT GCCGAACCGC TGTATGGCGA TATGAATGAC
ACCGGTCTGG TCTGGCAGCA GCGTCTCGGC GACTGGTGGC AGGATGAAAA ACCCTGGCTG
CGCGAAGCGC GTCGACTGGA AAGCGACAAA CAGCGCGACT GGTTCTTCTG GCGACAAAAA
CGCGGCGTTG TCGTCGCCGG GCGTATGAGC GCGGAAGAAG GCAAAAAAGT GGCGCAGTGG
GCGCAAACTC TGGGATGGCC ATTAATTGGC GACGTATTGT CGCAAACCGG GCAGCCGCTG
CCGTGCGCCG ACCTGTGGCT CGGCAACGCC AAAGCGGTGA CCGAACTGCA GCAGGCGCAA
ATTGTCGTCC AGCTTGGCAG TAGCCTTACC GGAAAACGCT TACTGCAATG GCAGGCAACC
TGCGAGCCGG AAGAGTACTG GGTAATCGAC AATATTGAAG GTCGTCTGGA CCCGGCGCAC
CATCGTGGAC GCAGACTGGT AGCGAAAATC GCCGACTGGC TGGAACTGCA TCCGGCGGAA
AAACGTAAAC CGTGGTGTGT AGAGATCCCG CGTCTGGCGG AACTGGCGTG GCAACGGGTG
GTCGCCCAGC GAGACACCTT TGGCGAAGCG CAGCTGGCGC ACCGTATCCG CGACTATCTG
CCGGAGCAGG GGCAATTGTT CGTGGGCAAT AGTCTGGTGG TGCGTCTGAT CGACGCGCTG
TCACAGTTGC CGGCCGGCTA TCCGGTATAC AGCAATCGCG GGGCGAGCGG CATTGACGGC
CTGCTTTCCA CGGCGGCGGG CGTGCAGCGC GCCAGCGCTA AATCGACGCT GGCTATCGTC
GGCGATTTAT CCGCGCTGTA CGATCTTAAC GCGCTGGCGT TACTACGTCA GGTATCCGCG
CCGTTTGTGT TGATTGTGGT CAACAATAAC GGCGGGCAAA TCTTCTCCCT GCTGCCGACG
CCGCAAAGCA AACGTGAGCG CTTTTATTTG ATGCCGCAAA ACGTCCATTT TGACCATGCG
GCCGCCATGT TTAACCTGCG CTATCATCGC CCGGAAAACT GGGAAGAACT GGAGTCTGCG
CTGGCTGGCG CGTGGCGAAC CCCGGCGACA ACGGTGATTG AGCTGGTGGT AAACGATACG
GACGGCGCGC AGACGTTGCA GCAACTTTTG GCTCAGGTAA GCCATCTATG A
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| Protein sequence | MSVSAFNRRW AAVILEALTR HGVRHVCIAP GSRSTPLTLA AAENPAFIHH THFDERGLGH
LALGLAKVSQ QPVAVIVTSG TAVANLYPAL IEAGLTGEKL ILLTADRPPE LIDCGANQAI
RQAGMFASHP SQTLSLPRPT QDIPARWLVS TIDNALAMLH AGALHINCPF AEPLYGDMND
TGLVWQQRLG DWWQDEKPWL REARRLESDK QRDWFFWRQK RGVVVAGRMS AEEGKKVAQW
AQTLGWPLIG DVLSQTGQPL PCADLWLGNA KAVTELQQAQ IVVQLGSSLT GKRLLQWQAT
CEPEEYWVID NIEGRLDPAH HRGRRLVAKI ADWLELHPAE KRKPWCVEIP RLAELAWQRV
VAQRDTFGEA QLAHRIRDYL PEQGQLFVGN SLVVRLIDAL SQLPAGYPVY SNRGASGIDG
LLSTAAGVQR ASAKSTLAIV GDLSALYDLN ALALLRQVSA PFVLIVVNNN GGQIFSLLPT
PQSKRERFYL MPQNVHFDHA AAMFNLRYHR PENWEELESA LAGAWRTPAT TVIELVVNDT
DGAQTLQQLL AQVSHL
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