Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2144 |
Symbol | fliR |
ID | 6483969 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 2070605 |
End bp | 2071399 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642737499 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_002041246 |
Protein GI | 194444159 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0345603 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.00457903 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATACAGG TTACAAGCGA GCAATGGCTA TACTGGCTGC ATCTCTATTT CTGGCCTTTG CTGCGCGTAC TGGCGCTGAT TTCAACGGCA CCCATTCTCA GCGAGCGCGC TATTCCCAAG CGGGTAAAAC TGGGGTTGGG AATAATGATT ACCCTCGTTA TCGCGCCGTC GCTACCGGCA AACGATACGC CGCTTTTTTC TATTGCCGCC TTATGGCTGG CGATGCAACA AATTCTGATC GGTATTGCGC TGGGATTTAC CATGCAATTT GCCTTTGCGG CGGTGCGTAC CGCAGGTGAG TTTATCGGTC TGCAAATGGG GCTTTCCTTT GCCACCTTCG TCGACCCGGG CAGCCACCTG AATATGCCGG TTCTGGCGCG TATTATGGAT ATGCTCGCCA TGCTACTATT TCTCACCTTT AATGGCCATT TATGGCTTAT TTCGCTGTTG GTCGATACCT TCCACACTCT GCCCATCGGT AGTAACCCGG TGAACAGTAA TGCATTTATG GCGCTCGCCA GGGCCGGAGG GCTCATTTTC TTAAACGGAC TGATGCTGGC ATTGCCGGTC ATTACCCTCC TGCTTACGCT CAACCTGGCG CTGGGGCTAT TAAACCGCAT GGCGCCGCAG CTCTCGATAT TTGTTATCGG TTTCCCGCTT ACCCTCACCG TCGGCATTAT GCTGATGGCC GCGCTAATGC CATTAATTGC GCCGTTTTGC GAACATTTAT TCAGCGAAAT TTTCAATTTG CTTGCTGATA TTGTTAGCGA GATGCCGATA AATAATAACC CATAA
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Protein sequence | MIQVTSEQWL YWLHLYFWPL LRVLALISTA PILSERAIPK RVKLGLGIMI TLVIAPSLPA NDTPLFSIAA LWLAMQQILI GIALGFTMQF AFAAVRTAGE FIGLQMGLSF ATFVDPGSHL NMPVLARIMD MLAMLLFLTF NGHLWLISLL VDTFHTLPIG SNPVNSNAFM ALARAGGLIF LNGLMLALPV ITLLLTLNLA LGLLNRMAPQ LSIFVIGFPL TLTVGIMLMA ALMPLIAPFC EHLFSEIFNL LADIVSEMPI NNNP
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