Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1872 |
Symbol | oppC |
ID | 6483338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1833986 |
End bp | 1834894 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642737245 |
Product | oligopeptide ABC transporter permease protein OppC |
Protein accession | YP_002040997 |
Protein GI | 194442887 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.293082 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 82 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGTTAA GTAAGAAAAA CAGCGAGACG CTGGAAAATT TCAGTGAAAA GCTGGAGGTG GAAGGTCGCA GCCTTTGGCA GGATGCCCGC CGGCGCTTTA TGCATAACCG TGCGGCGGTG GCCAGTCTTA TTGTCCTGTT TCTGATAGCC CTGTTCGTGA CAGTGGCGCC TATGCTGTCG CAATTTACCT ATTTCGATAC CGACTGGGGC ATGATGTCCA GCGCGCCGGG TATGGCGTCC GGTCACTATT TCGGCACTGA CTCTTCCGGG CGCGATCTGT TGGTGCGCGT TGCCATCGGC GGGCGTATCT CATTGATGGT CGGGATTGCC GCCGCGCTGG TGGCGGTCAT TGTCGGAACG CTGTATGGCT CGCTGTCCGG CTATCTGGGC GGCAAAATTG ATTCTGTGAT GATGCGTTTG TTGGAGATCC TCAACTCGTT CCCGTTTATG TTCTTTGTGA TTTTGCTGGT GACGTTTTTT GGGCAGAACA TTCTGTTGAT TTTCGTCGCT ATCGGCATGG TCTCCTGGCT TGATATGGCG CGTATCGTGC GTGGCCAAAC CCTAAGTCTT AAACGTAAAG AGTTCATCGA AGCCGCGCAG GTGGGAGGTG TGTCGACCGC CAGCATTGTG ATCCGCCATA TTGTGCCTAA CGTCCTGGGC GTAGTGGTAG TGTATGCATC GTTGCTGGTG CCCAGCATGA TTCTGTTTGA GTCTTTCCTC AGTTTCCTGG GGCTTGGGAC GCAGGAACCG TTAAGCAGTT GGGGAGCGTT GTTGAGCGAT GGCGCAAATT CAATGGAAGT CTCACCGTGG CTGCTGCTGT TTCCGGCTGG CTTTCTCGTG GTGACGTTAT TCTGTTTTAA CTTTATTGGC GATGGCCTGC GTGATGCCCT CGACCCGAAA GATCGTTAA
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Protein sequence | MMLSKKNSET LENFSEKLEV EGRSLWQDAR RRFMHNRAAV ASLIVLFLIA LFVTVAPMLS QFTYFDTDWG MMSSAPGMAS GHYFGTDSSG RDLLVRVAIG GRISLMVGIA AALVAVIVGT LYGSLSGYLG GKIDSVMMRL LEILNSFPFM FFVILLVTFF GQNILLIFVA IGMVSWLDMA RIVRGQTLSL KRKEFIEAAQ VGGVSTASIV IRHIVPNVLG VVVVYASLLV PSMILFESFL SFLGLGTQEP LSSWGALLSD GANSMEVSPW LLLFPAGFLV VTLFCFNFIG DGLRDALDPK DR
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