| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1871 |
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| Symbol | oppD |
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| ID | 6483673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 1832967 |
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| End bp | 1833974 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642737244 |
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| Product | oligopeptide transporter ATP-binding component |
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| Protein accession | YP_002040996 |
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| Protein GI | 194443191 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.530449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 83 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTAT CAGAAACCGC AACTCAGGCA CCGCAACCGG CGAATGTACT GCTGGAGGTA
AACGATCTTC GTGTTACGTT CGCTACGCCA GATGGCGATG TGACGGCGGT CAACGATCTG
AACTTTACGC TTCGCGCTGG AGAAACGTTA GGTATTGTTG GCGAGTCTGG ATCGGGGAAA
TCGCAAACGG CGTTCGCATT AATGGGACTG CTGGCGACGA ATGGTCGAAT CGGCGGTTCT
GCGACCTTCA ACGGACGTGA AATTCTTAAT CTACCTGAGC GCGAACTGAA TACGCTGCGC
GCAGAACAGA TTTCGATGAT TTTTCAGGAT CCGATGACCT CGCTAAATCC TTATATGCGC
GTTGGGGAGC AGTTAATGGA AGTCCTGATG CTGCATAAAG GGATGAGCAA AGCGGAAGCT
TTTGAAGAGT CCGTCAGAAT GCTGGATGCC GTAAAAATGC CGGAAGCGCG CAAACGGATG
AAAATGTACC CGCACGAATT TTCCGGCGGA ATGCGTCAAC GTGTGATGAT TGCGATGGCG
CTGTTGTGCA GGCCGAAACT GCTTATTGCC GATGAGCCTA CCACCGCGCT TGATGTTACC
GTGCAGGCGC AGATTATGAC CTTGCTTAAT GAGCTAAAGC GCGAATTTAA TACCGCCATT
ATCATGATTA CCCACGATCT GGGCGTGGTC GCGGGTATTT GCGATAAGGT CCTGGTAATG
TATGCCGGGC GTACCATGGA ATACGGTAAG GCGCGCGATG TCTTTTATCA GCCCGTTCAT
CCGTATTCGA TAGGCTTGCT TAATGCGGTG CCGCGTCTGG ATAGCGAGGG GGCGGAAATG
TTGACGATTC CGGGCAATCC TCCCAATTTA TTGCGTTTGC CTAAAGGTTG TCCGTTCCAG
CCGCGTTGTC CTCATGCGAT GGAGATCTGC AATAATGCGC CGCCACTTGA AGCGTTCAGT
CCTGGTCGCT TGCGCGCCTG TTTTAAACCG GTGGAGGAAC TGCTATGA
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| Protein sequence | MSLSETATQA PQPANVLLEV NDLRVTFATP DGDVTAVNDL NFTLRAGETL GIVGESGSGK
SQTAFALMGL LATNGRIGGS ATFNGREILN LPERELNTLR AEQISMIFQD PMTSLNPYMR
VGEQLMEVLM LHKGMSKAEA FEESVRMLDA VKMPEARKRM KMYPHEFSGG MRQRVMIAMA
LLCRPKLLIA DEPTTALDVT VQAQIMTLLN ELKREFNTAI IMITHDLGVV AGICDKVLVM
YAGRTMEYGK ARDVFYQPVH PYSIGLLNAV PRLDSEGAEM LTIPGNPPNL LRLPKGCPFQ
PRCPHAMEIC NNAPPLEAFS PGRLRACFKP VEELL
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