Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1843 |
Symbol | |
ID | 6486475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1809434 |
End bp | 1810480 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642737218 |
Product | putative periplasmic protease |
Protein accession | YP_002040970 |
Protein GI | 194444766 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.0000005383 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGAATTGT TGTCTGAATA TGGCTTATTT TTGGCAAAAA TCGTCACCGT TGTGGTGGCC ATTGCCGTCA TTGTGCTGCT GATCGTGAAT GCTACGCAAC GCAAACGTCA GCGCGGCGAG CTGCGCGTGA CCAATTTGAG TGAGCAGTAT CAGGAGATGA AGGATGACCT TGCTGCGGCG TTGATGGATG GCCATCAGCA AAAACTGTGG CATAAAGCGC AGAAAAAAAA GCATAAGCAG GAGGCGAAAG CCGCCAAAGC GAAAGCGAAG CTGGGGGACA TTGCGACATC GGACAAACCG CGCGTATGGG TGATAGATTT CAAAGGCAGT ATGGACGCTC ACGAAGTTAA TGCGTTACGC GAAGAGGTCA CGGCGGTGCT GGCAGTGGTG AAACCCGGCG ATCGGGCGGT TGTGCGTCTG GAAAGCCCCG GTGGCGTTGT GCACGGCTAT GGCCTGGCGG CATCGCAATT GCAGCGCCTG CGCGATAAAA ATATTCCGCT GACCGTGACG GTGGATAAAG TCGCGGCAAG CGGAGGCTAC ATGATGGCCT GCGTGGCGGA AAAAATTATC GCGGCGCCGT TTGCTATTGT GGGGTCAATT GGTGTTGTCG CGCAAATCCC GAACTTTAAC CGCTTTCTCA AAAGTAAAGA CATTGATATT GAACTGCATA CCGCAGGGCA GTACAAACGT ACCCTGACTT TGTTAGGCGA GAATACGGAA GAAGGGCGGC AGAAGTTTCG TGAAGATCTC AACGAAACGC ACCATCTGTT CAAAGAGTTT GTGCAGCGGA TGCGTCCGGC TCTGGACATT GAACAGGTCG CCACGGGCGA ACACTGGTAC GGTCAGCAGG CGCTGGAGAA AGGACTGGTT GATGAGATTA ACACCAGCGA TGAGGTTATC CTCGGCCTGA TGGAAGGGCG TGAGGTGCTG AATGTGCGCT ATATGCAGCG TAAAAAACTG ATCGATCGTG TTACCGGCAG CGCGGCGGAA AGCGCGGATC GGCTACTGCT GCGCTGGTGG CAGCGTGGAC AAAAGCCATT GATGTAA
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Protein sequence | MELLSEYGLF LAKIVTVVVA IAVIVLLIVN ATQRKRQRGE LRVTNLSEQY QEMKDDLAAA LMDGHQQKLW HKAQKKKHKQ EAKAAKAKAK LGDIATSDKP RVWVIDFKGS MDAHEVNALR EEVTAVLAVV KPGDRAVVRL ESPGGVVHGY GLAASQLQRL RDKNIPLTVT VDKVAASGGY MMACVAEKII AAPFAIVGSI GVVAQIPNFN RFLKSKDIDI ELHTAGQYKR TLTLLGENTE EGRQKFREDL NETHHLFKEF VQRMRPALDI EQVATGEHWY GQQALEKGLV DEINTSDEVI LGLMEGREVL NVRYMQRKKL IDRVTGSAAE SADRLLLRWW QRGQKPLM
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