Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1577 |
Symbol | |
ID | 6484400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 1541629 |
End bp | 1543275 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642736963 |
Product | fumarate hydratase class I, anaerobic |
Protein accession | YP_002040715 |
Protein GI | 194443891 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 0.551964 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAACA AACCCTTCTT TTATCAAGAC CCTTTTCCCC TCAAAAAGGA CGATACCGAG TACTACTTGT TGACCAGCGA ACATGTTTCC GTCGCCGAAT TCGAAGGACA AGAGATCCTG AAAGTCGCGC CGGAAGCGCT AACGCTGTTG GCGCGTCAGG CCTTCCACGA TGCGTCTTTT ATGCTACGTC CCGCGCATCA GCAGCAGGTG GCGGATATTC TGCGCGATCC GCAGGCCAGT GAAAACGACA AATATGTCGC GCTGCAATTC CTGCGAAACT CCGATATCGC GGCCAAGGGC GTGTTGCCCA CCTGCCAGGA TACCGGTACG GCCATTATTG TCGGCAAAAA AGGTCAACGC GTCTGGACTG GTGGAGGTGA TGAAGCGGCG CTGGCTCGCG GCGTATATAA CACCTATATC GAAGATAACC TGCGCTATTC ACAGAACGCG GCGCTGGATA TGTACAAAGA GGTCAATACC GGTACTAACC TGCCGGCGCA GATCGATCTC TACAGCGTCG ATGGCGATGA ATATAAATTC CTCTGTATCG CTAAAGGCGG CGGATCGGCG AATAAAACCT ACCTCTATCA GGAGACAAAA GCGCTTCTGA CGCCGGGTAA GCTTAAAAAT TATCTCGTCG ATAAGATGCG TACGCTGGGC ACCGCCGCTT GTCCGCCGTA TCACATCGCG TTTGTCATTG GCGGCACCTC GGCGGAAGCG AACCTGAAGA CCGTTAAGCT GGCCTCGGCA AAATACTATG ATGCGCTACC AACCGAAGGC AATGAACACG GGCAGGCCTT CCGCGATATT GAGCTGGAAA AAGAATTGTT GCTTGAGGCG CAAAATCTTG GCTTAGGCGC GCAGTTCGGC GGCAAGTATT TCGCTCACGA TATTCGTGTC ATCCGATTGC CGCGCCATGG GGCATCGTGT CCGGTAGGTA TGGGCGTGTC CTGCTCCGCG GATCGAAACA TTAAAGCGAA GATCAACCGG GAAGGGATCT GGATCGAGAA GCTGGAGCGC AATCCCGGTA AATATATTCC AGAGGCGCTG CGCCAGGCGG GAGAGGGCGA GGCGGTGCGC GTTGATCTTA ACCGTCCCAT GAGCGAGATA CTGCAACAAC TGTCGCAGTA TCCGGTATCA ACGCGCCTGT CGCTGAACGG CACGATTATT GTGGGCCGCG ACATCGCGCA CGCTAAACTG AAAGAACGGA TGGACAGAGG CGAAGGTTTG CCGCAGTACA TCAAAAATCA TCCTATCTAT TATGCGGGGC CGGCAAAAAC GCCGGAAGGG TATGCCTCCG GGTCGCTTGG GCCGACTACC GCAGGACGAA TGGACTCTTA TGTTGATCAG CTCCAGTCGC AGGGCGGCAG TATGATCATG CTGGCGAAAG GCAACCGCAG CCAGCAGGTG ACCGATGCCT GTAAGAAACA TGGCGGCTTC TACCTGGGCA GTATCGGCGG CCCGGCAGCC GTTCTGGCGC AGGGTAGTAT CAAGCGCCTG GAGTGCGTGG AATATCCTGA ACTGGGTATG GAGGCTATCT GGAAAATTGA AGTGGAGGAT TTTCCGGCCT TCATTCTGGT GGATGATAAA GGCAACGATT TCTTCCAGCA GATTCAGTCA TCGCAGTGCG CGCGCTGCGT TAAGTAA
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Protein sequence | MSNKPFFYQD PFPLKKDDTE YYLLTSEHVS VAEFEGQEIL KVAPEALTLL ARQAFHDASF MLRPAHQQQV ADILRDPQAS ENDKYVALQF LRNSDIAAKG VLPTCQDTGT AIIVGKKGQR VWTGGGDEAA LARGVYNTYI EDNLRYSQNA ALDMYKEVNT GTNLPAQIDL YSVDGDEYKF LCIAKGGGSA NKTYLYQETK ALLTPGKLKN YLVDKMRTLG TAACPPYHIA FVIGGTSAEA NLKTVKLASA KYYDALPTEG NEHGQAFRDI ELEKELLLEA QNLGLGAQFG GKYFAHDIRV IRLPRHGASC PVGMGVSCSA DRNIKAKINR EGIWIEKLER NPGKYIPEAL RQAGEGEAVR VDLNRPMSEI LQQLSQYPVS TRLSLNGTII VGRDIAHAKL KERMDRGEGL PQYIKNHPIY YAGPAKTPEG YASGSLGPTT AGRMDSYVDQ LQSQGGSMIM LAKGNRSQQV TDACKKHGGF YLGSIGGPAA VLAQGSIKRL ECVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQQIQS SQCARCVK
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