Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A1315 |
Symbol | mfd |
ID | 6485007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 1300676 |
End bp | 1304122 |
Gene Length | 3447 bp |
Protein Length | 1148 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642736713 |
Product | transcription-repair coupling factor |
Protein accession | YP_002040470 |
Protein GI | 194446626 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.0000147681 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTGAAA AACAACGTTA CACGCTGCCG ACAAAAGCGG GCGATCAGCG CCAGTTGGGC GAACTTACCG GTGCCGCCTG CGCTACGCTG GTGGCGGAGA TAGCTGAACG CCATGCCGGT CCGGTGGTAC TCATAGCGCC TGACATGCAA AATGCTCTGC GATTGCATGA TGAAATCCGC CAGTTTACCG ATCAGATGGT CATGAACCTG GCGGACTGGG AAACGCTACC GTATGACAGC TTCTCCCCGC ATCAGGAAAT TATCTCTTCG CGTCTGTCCA CGCTCTACCA GTTGCCGTCG ATGCAGCGCG GCGTCTTGAT TGTACCGGTA AACACCCTGA TGCAGCGCGT TTGTCCGCAT AGCTATCTGC ATGGTCATGC GCTGGTGATG AAAAAAGGCC AGCGGCTGTC CCGCGACGCT CTGCGCGCGC AGCTTGACAG CGCCGGTTAT CGGCATGTCG ATCAGGTGAT GGAGCATGGC GAATACGCGA CGCGCGGCGC GCTGTTGGAT CTCTTTCCGA TGGGCAGCGA ACAGCCTTAT CGCCTCGACT TTTTTGATGA TGAAATCGAC AGCCTGCGTC TGTTTGACGC GGATACCCAG CGTACGCTGG AGGAGGTTGA GGCCATCAAT TTGTTGCCCG CGCACGAATT TCCTACCGAC AAAGCCGCTA TTGAGCTTTT CCGTAGCCAG TGGCGCGATA CCTTTGAGGT AAAACGCGAC GCCGAGCACA TCTATCAGCA GGTCAGCAAA GGCACCCTCC CCGCCGGGAT CGAATACTGG CAGCCGCTCT TTTTCAGCGA ACCGTTACCG CCATTATTTA GCTACTTCCC CGCCAATACT CTGGTGGTGA ATACCGGCTC GCTGGAAACC AGCGCCGAAC GCTTTCAGGC CGATACGCTG GCGCGTTTTG AAAATCGTGG CGTCGATCCT ATGCGCCCGC TTTTGCCGCC GGAAGCCCTC TGGCTACGGG TGGATGAGCT CTTTTCCGAG CTTAAACGCT GGCCTCGCCT CCAGCTTAAA ACCGACCACC TGCCGGAAAA AGCCGCCAAT ACCAATCTCG GTTTCCAGAA ATTACCGGAT TTGGCTATCC AGGCGCAGCA GAAAGCGCCG CTGGACGCGC TGCGTAAGTT CCTCGAATCT TTCAGCGGTC CGGTGATTTT TTCTGTGGAA AGCGAAGGAC GCCGCGAAGC GCTGGGAGAG CTCCTGGCCC GCATAAAAAT CGCGCCGAAG CGGATATTAC GCCTGGACGA GGCGCAGGAT GCGGGACGCT ATCTGATGAT TGGCGCCGCA GAACATGGTT TTATCGACAC CCAACGCAAT CTGGCGCTGA TTTGCGAAAG CGATCTCCTG GGTGAACGGG TCGCGCGTCG CCGCCTGGAT TCCCGTCGTA CGATCAACCC GGATACGTTG ATTCGTAACC TGGCGGAGCT CCACGTCGGT CAACCGGTAG TGCATCTGGA GCACGGCGTC GGACGCTATG CCGGCATGAC CACTCTGGAG GCTGGCGGCA TCAAGGGTGA GTATCTGATG CTCACCTACG CCAATGACGC CAAACTGTAT GTGCCGGTTT CCTCATTGCA TCTGATTAGC CGCTATGCCG GCGGCGCGGA AGAAAGTGCG CCGCTGCATA AACTGGGTGG CGACGCCTGG TCGCGCGCCC GGCAGAAAGC GGCGGAAAAA GTGCGCGATG TCGCAGCGGA ACTGTTGGAT ATTTATGCGC AACGGGCGGC AAAAGAGGGG TTTGCCTTTA AGCATGATCG TGAGCAGTAT CAGTTATTCT GCGACAGCTT CCCGTTTGAA ACGACGCCCG ATCAGGCACA GGCGATTAAC GCCGTATTGA GCGATATGTG CCAACCGCTG GCGATGGACA GGCTGGTGTG CGGCGACGTC GGCTTCGGCA AAACCGAAGT GGCGATGCGC GCCGCGTTCC TGGCGGTGGA AAACCATAAA CAGGTAGCGG TACTGGTGCC GACCACGCTG CTGGCGCAGC AACACTATGA CAACTTCCGC GACCGTTTCG CCAACTGGCC GGTACGCATT GAGATGCTGT CCCGCTTTCG CAGCGCCAAA GAGCAGACGC AAATCCTGGC GGAAGCCGCC GAGGGTAAGA TCGATATTCT GATCGGTACG CATAAACTGC TACAAAGCGA TGTGAAGCTA CGCGACCTCG GCCTGCTGAT TGTCGATGAA GAGCACCGTT TCGGCGTGCG CCACAAAGAG CGAATTAAGG CGATGCGCGC CGATGTCGAT ATTCTGACGC TCACGGCGAC GCCGATCCCG CGGACGCTGA ATATGGCGAT GAGCGGTATG CGCGATCTCT CTATTATCGC CACCCCCCCT GCCCGTCGTC TGGCGGTAAA AACCTTTGTC CGCGAGTATG ATAGCCTGGT GGTAAGGGAA GCGATTCTGC GTGAAATCCT GCGCGGCGGT CAGGTTTACT ATTTGTACAA TGACGTCGAA AATATTCAGA AAGCCGCAGA GCGGCTGGCG GAACTGGTGC CGGAAGCGCG AATCGCTATA GGCCACGGGC AGATGCGTGA ACGTGAGCTA GAACGGGTCA TGAACGATTT CCACCATCAA CGTTTTAACG TGCTGGTGTG TACTACCATT ATCGAAACGG GGATCGACAT TCCCACCGCT AACACGATCA TCATTGAACG CGCGGATCAT TTCGGCCTCG CGCAGTTGCA CCAGCTGCGT GGCCGCGTTG GGCGCTCGCA CCATCAGGCC TACGCCTGGC TGTTGACGCC ACATCCTAAG GCCATGACCA CCGATGCGCA AAAACGGCTG GAGGCGATTG CGTCGCTGGA GGATTTAGGC GCCGGGTTTG CGCTGGCGAC CCACGATCTG GAGATCCGCG GCGCGGGCGA ACTGCTTGGC GAAGAGCAAA GCGGCTCAAT GGAAACCATC GGCTTCTCAC TCTACATGGA ATTGCTGGAA AACGCCGTTG ATGCGCTGAA AGCAGGCCGC GAACCCTCGC TGGAAGATCT CACCAGTCAG CAAACGGAAG TCGAGCTGCG AATGCCGTCG TTACTGCCGG ATGATTTTAT TCCGGATGTT AATACCCGGC TGTCATTCTA TAAACGCATT GCCAGCGCGA AGAACGAAAA CGAGCTGGAA GAGATCAAAG TGGAATTGAT CGACCGCTTC GGCCTGCTGC CCGATCCGGC GCGTAATCTG CTGGATATCG CACGCCTGCG CCAACAGGCG CAAAAGCTCG GCATCCGAAA ACTGGAGGGT AACGAGAAAG GCGGAACGAT TGAGTTCGCC GAGAAAAACC ACGTTGACCC CGCCTGGCTT ATCGGGTTGC TGCAAAAACA GCCGCAGCAT TTCCGTCTGG ATGGCCCGAC GCGCCTCAAG TTTATTCAGG ATTTAAGCGA ACGTAAAACG CGTATAGACT GGGTACGCCA GTTTATGCAG CAACTGGAAG AAAACGCTAT TGCATAA
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Protein sequence | MPEKQRYTLP TKAGDQRQLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIR QFTDQMVMNL ADWETLPYDS FSPHQEIISS RLSTLYQLPS MQRGVLIVPV NTLMQRVCPH SYLHGHALVM KKGQRLSRDA LRAQLDSAGY RHVDQVMEHG EYATRGALLD LFPMGSEQPY RLDFFDDEID SLRLFDADTQ RTLEEVEAIN LLPAHEFPTD KAAIELFRSQ WRDTFEVKRD AEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LVVNTGSLET SAERFQADTL ARFENRGVDP MRPLLPPEAL WLRVDELFSE LKRWPRLQLK TDHLPEKAAN TNLGFQKLPD LAIQAQQKAP LDALRKFLES FSGPVIFSVE SEGRREALGE LLARIKIAPK RILRLDEAQD AGRYLMIGAA EHGFIDTQRN LALICESDLL GERVARRRLD SRRTINPDTL IRNLAELHVG QPVVHLEHGV GRYAGMTTLE AGGIKGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEESA PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVENHK QVAVLVPTTL LAQQHYDNFR DRFANWPVRI EMLSRFRSAK EQTQILAEAA EGKIDILIGT HKLLQSDVKL RDLGLLIVDE EHRFGVRHKE RIKAMRADVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSQ QTEVELRMPS LLPDDFIPDV NTRLSFYKRI ASAKNENELE EIKVELIDRF GLLPDPARNL LDIARLRQQA QKLGIRKLEG NEKGGTIEFA EKNHVDPAWL IGLLQKQPQH FRLDGPTRLK FIQDLSERKT RIDWVRQFMQ QLEENAIA
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