| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1238 |
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| Symbol | csgD |
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| ID | 6486024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 1231515 |
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| End bp | 1232165 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 642736638 |
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| Product | DNA-binding transcriptional regulator CsgD |
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| Protein accession | YP_002040395 |
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| Protein GI | 194444624 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.147361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTTAATG AAGTCCATAG TAGTCATGGT CACACACTAT TGTTGATCAC AAAGCCATCT
CTGCAAGCTA CGGCATTATT GCAACATTTA AAGCAATCGC TGGCCATAAC CGGAAAACTG
CATAATATTC AACGTTCTCT GGAAGATATC TCAGCCAGTT GCATTGTTTT AATGGATATG
ATGGAAGCGG ATAAGAAGCT TATCCACTAT TGGCAGGATA ATTTAAGCCG CAAAAACAAT
AATATAAAAA CATTATTGTT AAATACCCCT GACGATTATC CCTACCGTGA AATTGAAAAC
TGGCCTCATA TTAACGGCGT GTTTTACGCC ACTGAAGACC AGGAACACGT GGTCAGCGGA
TTACAGGGTA TTCTGCGTGG CGAATGCTAT TTTTCACAAA AATTAGCCAG TTACCTGATT
ACGCACTCAG GAAATTACCG CTACAACAGC ACCGAGTCCG CATTACTCAC TCATCGCGAA
AAAGAGATCC TCAATAAGTT ACGTATTGGT GCCTCTAATA ATGAAATCGC GAGGTCGCTA
TTTATCAGCG AGAATACGGT TAAGACACAT CTTTATAATC TTTTCAAAAA GATAGCTGTC
AAAAATCGCA CCCAGGCAGT TTCATGGGCA AACGATAATC TCAGGCGGTA A
|
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| Protein sequence | MFNEVHSSHG HTLLLITKPS LQATALLQHL KQSLAITGKL HNIQRSLEDI SASCIVLMDM
MEADKKLIHY WQDNLSRKNN NIKTLLLNTP DDYPYREIEN WPHINGVFYA TEDQEHVVSG
LQGILRGECY FSQKLASYLI THSGNYRYNS TESALLTHRE KEILNKLRIG ASNNEIARSL
FISENTVKTH LYNLFKKIAV KNRTQAVSWA NDNLRR
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