Gene SNSL254_A1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1216 
Symbol 
ID6486558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp1208846 
End bp1209484 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content55% 
IMG OID642736618 
ProductHTH-type transcriptional regulator RutR 
Protein accessionYP_002040376 
Protein GI194446026 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value0.591915 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAAC GCACAGAGAA AAAAATCGGG AAACGCTCGC AGGCCACCGG TGCAAAACGG 
CAGCTTATCT TAACCGCCGC GCTTGCCATT TTTTCCCAGT ATGGCATTCA TGGCGCGCGT 
CTTGAGCAGG TCGCCGAGCG GGCAGGCGTC TCCAAAACCA ATCTGCTTTA TTATTATCCC 
TCGAAAGAGG CGCTGTATGT CGCGGTAATG CGACAGATCC TGGATGTCTG GCTGGCGCCG 
CTCAAGGCGT TTCGCGCAGA ATTTTCCCCT CTGGAGGCCA TCAAAGAGTA TATCCGTCTC 
AAGCTGGAGG TTTCGCGTGA TTATCCGCAG GCGTCGCGGC TCTTCTGCAT GGAGATGCTG 
GCGGGCGCGC CGCTCTTAAT GGAGGAACTG ACCGGCGATC TAAAAGCGTT GATAGATGAA 
AAATCCGCGC TGATTGCCGG ATGGGTGCAC AGCGGGAAAC TGGCGCCCGT CTCCCCGCAC 
CATTTGATCT TCATGATTTG GGCCGCCACG CAACATTACG CCGATTTTGC CCCTCAGGTT 
GAGGCGGTAA CCGGCGCGAC GCTTCGCGAT GAAGCCTTTT TCAACCAAAC GGTCGAAAGC 
GTTCAGCGCA TTATTATTGA AGGGATTCGC GTGCGTTAA
 
Protein sequence
MSQRTEKKIG KRSQATGAKR QLILTAALAI FSQYGIHGAR LEQVAERAGV SKTNLLYYYP 
SKEALYVAVM RQILDVWLAP LKAFRAEFSP LEAIKEYIRL KLEVSRDYPQ ASRLFCMEML 
AGAPLLMEEL TGDLKALIDE KSALIAGWVH SGKLAPVSPH HLIFMIWAAT QHYADFAPQV 
EAVTGATLRD EAFFNQTVES VQRIIIEGIR VR