| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A1116 |
|---|
| Symbol | helD |
|---|
| ID | 6483209 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 1126906 |
|---|
| End bp | 1128960 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642736519 |
|---|
| Product | DNA helicase IV |
|---|
| Protein accession | YP_002040278 |
|---|
| Protein GI | 194446484 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.000000000516888 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGA AAGCAACTTC TCTTGGAAAA CGTCTGGCGC AACACCCGTA TGATCGTGCC
GTGATCCTCA ACGCTGGGGT GAAAGTGTCT GGCGACAGGC ATGAATATCT TATTCCATTC
AATCAGTTAT TGGCGATTCA CTGTAAGCGT GGGCTGGTAT GGGGCGAGCT GGAGTTTGTC
CTCCCCGAGG ATAAAGTCGT GCGTTTGCAC GGTACCGAGT GGTCGGAAAC CCAGCAATTC
CATCGCTATC TGGACGCGCA CTGGCGTCGC TGGAGCCAGG AGATGAGTGA TGTCGCCGCG
CAGGCATTAC AGGAGCAATG GGCGCGTATT AGTGAGCGAA CGGGCGAAAA CCAATGGCTT
ACCCGTGAAC GCGTTCGGGG GCTGGAACAC GAAATTCGCC AGACGTTTGC CGCCTTACCG
CTGCCGGTCT CACGTCTGGA GGAGTTTGCT CACTGTCGCG AGATATGGCG TAAGTGTCTG
GCATGGTTAC AGGATAGCGA GGGAAGTCGG CAGCAGCATA ATCAGGCGTA TGCTGATGCC
ATGCTGGAAG CGCATGCCGA CTTTTTTACG CAGATAGAAT CTTCTCCGCT TAATCCTTCC
CAGGCCAGGG CGGTGGTTAA CGGCGAATCA TCGTTACTGG TACTGGCGGG TGCGGGAAGC
GGCAAGACCT CGGTGCTGGT GGCGCGCGCG GGTTGGCTGT TGGCGCGCGG ACAAGCTGAT
GCGGGGCAAA TTCTTTTACT GGCGTTTGGT CGCAAGGCGG CAGAAGAGAT GGATGAGCGT
ATCCGCGAGC GCTTACATAC GGAAGAGATT ACTGCCCGTA CGTTCCATTC GCTGGCGCTG
TATATTATTC AGCAAGGCAG TAAAAAAGCG CCGGTTGTCA GTAAGCTGGA AAGTGACGCC
ACCGCGCGGC ATCAGCTATT TCTGCACACC TGGCATCAGC AGTGTAGCGA GAAAAAAGCG
CAGGCCAAAG GCTGGCGTCA GTGGCTGGAA GAGGAGATGC AGTGGGCGGT GCCGGAAGGT
AATTTCTGGG ACGATGAGAC ATTGCAGCGG CGTCTGGCCC CTCGCCTGGA TCGTTGGGTC
AGTTTGATGC GTATGCACGG CGGCGCGCAG GCAGAAATGA TCGCTGGCGC GCCAGAGGAG
TGCCGCGAGC TGTTTGGCAA ACGCATTAAG TTGATGGCGC CGCTGCTGAA GGCCTGGAAA
AGCGCATTGA AAGCGGAAAA TGCCGTTGAT TTCTCCGGGC TGATCCATCA GGCAATGGTG
ATCCTCGAAA AAGGGCGTTT TATTAGCCCG TGGAAGCATA TTCTGGTCGA TGAATTTCAG
GATATTTCCC CGCAACGGGC GGCGCTGTTA GAGGCGCTAC GCAAGCAGAA TAGCCAGACT
ACGCTGTTTG CCGTTGGCGA TGACTGGCAG GCGATTTACC GTTTTAGCGG GGCGCAGCTC
TCCTTAACGA CGGCGTTTCA TCAGACGTTC GGCGAGGGCG AGCATTGCCA CCTGGACACC
ACGTACCGCT TTAACAGTCG GATTGGCGAT ATTGCCAATC GCTTTGTACA GCAGAATCCG
CACCAGCTTA AAAAACCGTT AAATAGTCTG ACCCCAGGCG ATAAAAAAGC GGTGACGTTA
TTGGATGAAA GCCAGTTGGA CGCGTTACTG GATAAATTAT CCGGCTATGC GAAGGAAGAT
GAACGTATCC TGGTGCTGGC GCGCTATCAC CATCTGAAAC CCGCGAGTCT ACAAAAAGCG
GCGACTCGCT GGCCGAAGTT ACAGATAGAC TTCATGACTA TCCATGCCAG CAAAGGCCAA
CAGGCCGATT ACGTGATTCT TGTCGGATTG CAGGAGGGTA ACGACGGTTT CCCCGCCCCG
GCGCGAGAAT CCATTATGGA AAGTGCGCTT CTTCCTCAGG TTGAGGATTT TCCGGACGCT
GAAGAGCGGC GTTTGTTATA TGTGGCGTTG ACGCGCGCGC GTGCGCGGGT CTGGCTGCTT
TTTAATAAAG ATAATCCCTC GCGCTTTGTG GAGGCGCTTA AACAGCTGGA TGTGCCGGTG
GCGAGGAAGC CCTAA
|
|---|
| Protein sequence | MELKATSLGK RLAQHPYDRA VILNAGVKVS GDRHEYLIPF NQLLAIHCKR GLVWGELEFV
LPEDKVVRLH GTEWSETQQF HRYLDAHWRR WSQEMSDVAA QALQEQWARI SERTGENQWL
TRERVRGLEH EIRQTFAALP LPVSRLEEFA HCREIWRKCL AWLQDSEGSR QQHNQAYADA
MLEAHADFFT QIESSPLNPS QARAVVNGES SLLVLAGAGS GKTSVLVARA GWLLARGQAD
AGQILLLAFG RKAAEEMDER IRERLHTEEI TARTFHSLAL YIIQQGSKKA PVVSKLESDA
TARHQLFLHT WHQQCSEKKA QAKGWRQWLE EEMQWAVPEG NFWDDETLQR RLAPRLDRWV
SLMRMHGGAQ AEMIAGAPEE CRELFGKRIK LMAPLLKAWK SALKAENAVD FSGLIHQAMV
ILEKGRFISP WKHILVDEFQ DISPQRAALL EALRKQNSQT TLFAVGDDWQ AIYRFSGAQL
SLTTAFHQTF GEGEHCHLDT TYRFNSRIGD IANRFVQQNP HQLKKPLNSL TPGDKKAVTL
LDESQLDALL DKLSGYAKED ERILVLARYH HLKPASLQKA ATRWPKLQID FMTIHASKGQ
QADYVILVGL QEGNDGFPAP ARESIMESAL LPQVEDFPDA EERRLLYVAL TRARARVWLL
FNKDNPSRFV EALKQLDVPV ARKP
|
|---|
| |