Gene SNSL254_A1042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A1042 
Symbol 
ID6486468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp1058714 
End bp1060006 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content49% 
IMG OID642736448 
Productintegrase 
Protein accessionYP_002040207 
Protein GI194444835 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value0.0000195373 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTAATG CATCATACCC GACAGGCGTC GAAAACCACG GCGGTTCGCT CCGCATCTGG 
TTTCTGTATA AAGGTAAACG TGTCAGGGAA AACCTTGGTA TCCCTGACAC TGCAAAAAAT 
CGCAAGATAG CTGGCGAACT GCGTTCTTCG GTTTGTTTTG CGATAAGGAT GGGGAATTTT 
AACTATGTGG AAAAATTCCC AAACTCACCG AACCTTGCCC GGTTCGGTCA GGATAGAAAG 
GAAATTACTG TGCTGGAGCT TACCGAAAGA TGGTCCGAGC TGAAGAGAAT GGAGATCAGC 
TCTAATACCA TGAGTAGGTA CGAATCTATC ATAAAAAACA TGCTTCCACT CATCGGCGAA 
AACAAAATGG TTTCTGCGGT GACTACTGAG GATTTGCTGT ATGTCAGGAA GGAGTTGCTG 
ACGGGCTTTC AGGTAATGAA GAAGGATCAC CGGACTCAGG TTAAAGGCCG GAAATCGTCC 
ACAGTGAATA ATTACATGAT GCTGATGGCC GAGATCTTCC AGTTTGGAAC AGATAACGGC 
TATGCAAAGG AAAACCCGTT TAGCGGAATT AACCGTCTCA AGAAAGCGAA AGGGGAACCA 
GATCCACTCA CGACAGACGA GTTCATCAGG TTTATCCAGG CATGCGGACA CCAGCAGATG 
AGAAATCTCT GGTCACTGGC AGTCTATACC GGAATGAGGC ATGGGGAGTT GTGCGGTCTG 
GCCTGGGAAG ATATCGATCT GCATGCCGGG ACGATCATTG TGAAGCGCAA CCTTACCCAG 
ACGGATGAGT TCACCCTGCC AAAAACCGAC GCAGGTACTG ACAGGGTGAT ATATCTCATT 
CAACCAGCTA TTGATGCCCT GAGGAATCAG GCCCAGTTGA CACGCCTTGG CCGGCAGTTT 
GAGGTTGAAG TGAAGTTGCG GGAATATGGA CAATCTGTCA TTCAGCCCTG CACGTTCGTA 
TTCAGCCCTC AATGCGTCAA ACGTGGACCT CGCACAGGAT ATCACTACGC GGTTAATTCC 
ATTAATAAAA TTTGGGCCCC GATAATCAAG CGTGCCGGCA TTCGTTACCG TAACGCGTAT 
CAGTCACGAC ATACCTATGC ATGCTGGTCA TTATCAGCTG GTGCTAACCC AAACTTTATA 
GCAACGCAGA TGGGGCATAC CGATGCACAG ATGGTTTACA AGGTGTATGG AAAGTGGATG 
TCAGAGAAGA GCGCAGAACA GGTTTCTCTG CTCAACCAGG CACTTTTCCG CTATGCCCCA 
TCACTGCCCC AAAGCATGGT AGCAGCGCAG TAG
 
Protein sequence
MANASYPTGV ENHGGSLRIW FLYKGKRVRE NLGIPDTAKN RKIAGELRSS VCFAIRMGNF 
NYVEKFPNSP NLARFGQDRK EITVLELTER WSELKRMEIS SNTMSRYESI IKNMLPLIGE 
NKMVSAVTTE DLLYVRKELL TGFQVMKKDH RTQVKGRKSS TVNNYMMLMA EIFQFGTDNG 
YAKENPFSGI NRLKKAKGEP DPLTTDEFIR FIQACGHQQM RNLWSLAVYT GMRHGELCGL 
AWEDIDLHAG TIIVKRNLTQ TDEFTLPKTD AGTDRVIYLI QPAIDALRNQ AQLTRLGRQF 
EVEVKLREYG QSVIQPCTFV FSPQCVKRGP RTGYHYAVNS INKIWAPIIK RAGIRYRNAY 
QSRHTYACWS LSAGANPNFI ATQMGHTDAQ MVYKVYGKWM SEKSAEQVSL LNQALFRYAP 
SLPQSMVAAQ