Gene SNSL254_A0377 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0377 
Symbol 
ID6486097 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp384165 
End bp385490 
Gene Length1326 bp 
Protein Length441 aa 
Translation table11 
GC content52% 
IMG OID642735802 
Productputative fimbrial usher 
Protein accessionYP_002039576 
Protein GI194446564 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.898506 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value0.223329 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTTTA GTTTCCGAAC GCTATTGTTT ATCACCAGCC TGTTCGTCAG CGCCGGAACA 
TGGTCGTCAT GTATCAAAGT CACCGATAAG AGCGCGCTCT CTGACGCGGC GATAAAAGCG 
GGCTACACGG CGCAAAACTG GATCGGCGCA ACTGACACGA ATACGGGTAA TATCGGTTTG 
CCAACGGTGA TTAGCATCAG TAATAGTGAA ACATTTCAAC CCTCCGGCAC ACTATTGGCC 
AGTGGGATCG GTAACTTCCT GACGGCCGCC ACCGGCACGC CCTATTCCAG TAAACAGGTA 
CTTTACCGCT GCGATTCCGC CGATGCCGGG AAGCTCTATG AGATGTATTC GACAAATGGC 
GATAGCGCTT TTGCGGGGGC ATTTTTTACT CCCGAAGTAG AAGGCGCTTA TTATGATGTG 
GAGCGTAATG TTGCTGTCCG TATGACAAAC CTCAGTACCG GCGAATATTA CAGCCGCTTC 
TGGAAAGAAC GCCAACTTAC CGCAGACAGT TGGTTTCAGG ATGACAAATA TATTTATATT 
CCTGCCAGCG CGTTTAGCAA CGTGTTATAT GAGATGTTTA AAATTGACTC AAGAAAATAT 
TTTGCCTACC AGAATCCAAT GGACCGAGAT ACCTGGACGC AGCCTCGGGG TTATATCGCG 
TTTAAAGGCC CAGGCTTGAT TACCGAGCGG ATCAAAGCGG GACTGGATCA TGCCAGCGAT 
TATTATGGCT GGCCCAGCTA TTGGCCCGGG GCATGGAGTA CATATAATAG CGTCACCTAT 
GTTCGCGGCG CGTTATGTAA AATCACAGAT TATCCTGCGA TCGTGAAAAT TCCCCCTGTC 
GCCGTCGGCA TATTAGCCGC CGGAGGCAAT AGTCAGGCGC CTTTCCACGT CAGCCTGGAA 
TGTGAGTCCG GTGCCGTGTC CAGTGCCCTC CCGTCCACCA GCGCCGCTAA TGTCGCAATG 
GGGTTTGTCG TTAATCAACC CACCGCTGTG GCGGCGGCGC GTCGCCTGGG GCTAACCACA 
TCCGCAGGCG GTCTGTCGTG GCTACTGGAC ACCCATTATG GCGAACCTGG CGTAGCTTCC 
GGAGTGGGTA TCCGCATCTA TAACGATGCC GGTACGCCAA TTAACCTGTT ACCCGATCGG 
ATCAAGACAG GCACTGGCAA CGCCCGAGGC TGGTATGGCT ATAAAGATTT AACCACACGG 
GTATCATCCG GTTCAGTAGA AACCTACAGC GGTGATTTTA CTGCCTCGCT TGAGGCGATC 
GGCGGACAAA CAGTAACGGC AGGAAGCGTG AATGCGCAAT TACAGGCAGT GGTTAGTTTT 
CAGTAA
 
Protein sequence
MLFSFRTLLF ITSLFVSAGT WSSCIKVTDK SALSDAAIKA GYTAQNWIGA TDTNTGNIGL 
PTVISISNSE TFQPSGTLLA SGIGNFLTAA TGTPYSSKQV LYRCDSADAG KLYEMYSTNG 
DSAFAGAFFT PEVEGAYYDV ERNVAVRMTN LSTGEYYSRF WKERQLTADS WFQDDKYIYI 
PASAFSNVLY EMFKIDSRKY FAYQNPMDRD TWTQPRGYIA FKGPGLITER IKAGLDHASD 
YYGWPSYWPG AWSTYNSVTY VRGALCKITD YPAIVKIPPV AVGILAAGGN SQAPFHVSLE 
CESGAVSSAL PSTSAANVAM GFVVNQPTAV AAARRLGLTT SAGGLSWLLD THYGEPGVAS 
GVGIRIYNDA GTPINLLPDR IKTGTGNARG WYGYKDLTTR VSSGSVETYS GDFTASLEAI 
GGQTVTAGSV NAQLQAVVSF Q