Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0319 |
Symbol | |
ID | 6482664 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 333121 |
End bp | 335310 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642735751 |
Product | Rhs family protein |
Protein accession | YP_002039526 |
Protein GI | 194442493 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.946115 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 0.027027 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTTG TATCCACAAA TAATAAATCC GGTATAGGAG GGCTGACGAC AACCACGCCG CCGATAACCG GAGAAAGTGG CGGTGTCACC GCAGATTCAG TCGCCGGAAG CGTGGCAGAT GCGGCGGAAG CCGCCGTGGA ACAGGCTGCG GGATCGCTGT TTGGCGCATT GCCGGAGCCA TCAGGACTGG TGAAAGCCGC GGTGGCAGCG GCGCAGGCTG CCGCCGCCGC AGGTATGGCG CAGGATGCGG TATCGGCCAT CGTCTCTGCT GTTGCAGGCG GGCCGGGGGC GCATAATGTG ACGGTCAGCG GCAGCGCCGT ACCGCCGGGC GCATTACTGT TCGCCAGCCT GGACGGCGGC GAAACATTAA GTGAACTGTT CAGCTATGTG GTACAGCTAA AAACGCCCGA CACCCTGAAT CTGGGCTATG TCTCCCCGGC GGCCAACCTG CCGCTCAAAC CGATGGTGGG CAAAGATCTG TGCGTCAACA TCGAACTGGA TGGTGGCGGT AAACGACATA TCAGCGGGCT GGTCACGGCG GCGCGGGTGG TGGGCCATGA AGGGCGTTCG GTTACCTATG AGCTGCGTAT GGAGCCGTGG GTAAAACTGC TGACCCATAC CAGCGACTAC AAAGCATTCC AGAATAAAAC CGTGGTGGAT ATTCTGGATG AAGTGCTGGC GGAATACCCC TACCCGGTGG AAAAGCGGCT GGTGGAAAGC TACCCGGTAC GTACCTGGCA GGTGCAGTAC GGTGAAACTG ATTTTGATTT TCTTCAGCGA CTGATGCAGG AGTGGGGCAT CTACTGGTGG TTTGAGCACA GCGAGGACAG CCACACGCTG GTGCTGGCGG ATGCCATCAG CGCCCACAAA GCATGTCCGG ACTCGCCGCT GGTCGAGTGG CACCAGGAAG GGCTGAAGCT GGACAAGGAG TTTATCCACA CTATCACGGC AAACGAGAGT CTGCGGACTG GCCAGTGGGT GCTGGATGAT TTCGATTTTA CGAAGCCACG TTCATTGCTG GCAAACACCG TGGCAAACCC GCGTGAAACC GGTCATGCCA CCTACGAGCA TTATGAGTGG CCGGGAGACT ACTTCGACAA GAGTGAAGGC GAGATGCTGA CGCGCATTCG TATGGAAGCG CAGCGCAGCC CCGGCAGTCG GGTGCTGGGG GGAGGGAATA TCCGCACACT CATGACCGGT TATACCTTCA CGCTGGAAAA CTATCCCACT GCCGAAGTCA ATCAGGAATA CCTGCTGATG CAGACCTTGC TGTTTGTGCA GGACAACGCG CAGCACAGCG GGCAGGACCA GCACTTTACC TTTTCCACCC GTTTTGAACT GCACCCCACC CGTGAGGTGT TCCGCCCGCA GCGGACGGTG AGCAAACCCC ACACCAAAGG GCCGCAGAGC GCCATCGTCA CCGGCCCGGC GGGCCAGGAA ATCTGGACGG ATCAGTACGG GCGGGTAAAG GTACAGTTTG GCTGGGATCG CTACGGCAAA ATGGATGAAA ACAGCTCCTG CTGGATACGC GTCAGCTACC CGTGGGCGGG CAAAGGCTTC GGGATGATCC AGATCCCGCG TATCGGCCAG GAAGTGCTGG TGGATTTCAA AAACGGCGAT CCGGATCTGC CGATCATCGT GGGGCGTACC TACAACCAGG ACACCATGCC ACCGTGGGGA CTGCCGGGAA TGGCGTCGCA GAGCGGGATC TTCAGCCACT CGCTGTATGG CGGGCCAACG AACGGCAACA TGCTGCGTTT TGACGACAAA ACCGGCGCGG AGGAAGTGAA GTTCCACGCG GAAAAAGATC TCAACACCAC GGTGAAGAAT AATGAAACGC ATACGGTTAT GGTGGATCGC ACTAAAACCA TTATTAAAAA TGAAACCAAC AGTATTGGTG AGGACAGAAA CACCACGGTA ACGAAGAATG ACGGCCTTTC CGTAAAACTG GCGCAGACGA TCAATATCGG CACCACTTAT CGTTTAGATG TTGGCGATCA ATTCACGCTT CGCTGCGGCA ATGCGGCGCT TGTTTTACAT AAGGACGGCT CCATTGAGTT TTGTGGCAAG CAACTGATGT TACATACCAG CGATGTCATG CAACTGATTG GTAAAGGTAT TGATATGAAC CCGGATGGCG GCACAGCCGT AACCGCCGAT GATATTGCCC CCCTTCCCAC CTCTGAGTGA
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Protein sequence | MSFVSTNNKS GIGGLTTTTP PITGESGGVT ADSVAGSVAD AAEAAVEQAA GSLFGALPEP SGLVKAAVAA AQAAAAAGMA QDAVSAIVSA VAGGPGAHNV TVSGSAVPPG ALLFASLDGG ETLSELFSYV VQLKTPDTLN LGYVSPAANL PLKPMVGKDL CVNIELDGGG KRHISGLVTA ARVVGHEGRS VTYELRMEPW VKLLTHTSDY KAFQNKTVVD ILDEVLAEYP YPVEKRLVES YPVRTWQVQY GETDFDFLQR LMQEWGIYWW FEHSEDSHTL VLADAISAHK ACPDSPLVEW HQEGLKLDKE FIHTITANES LRTGQWVLDD FDFTKPRSLL ANTVANPRET GHATYEHYEW PGDYFDKSEG EMLTRIRMEA QRSPGSRVLG GGNIRTLMTG YTFTLENYPT AEVNQEYLLM QTLLFVQDNA QHSGQDQHFT FSTRFELHPT REVFRPQRTV SKPHTKGPQS AIVTGPAGQE IWTDQYGRVK VQFGWDRYGK MDENSSCWIR VSYPWAGKGF GMIQIPRIGQ EVLVDFKNGD PDLPIIVGRT YNQDTMPPWG LPGMASQSGI FSHSLYGGPT NGNMLRFDDK TGAEEVKFHA EKDLNTTVKN NETHTVMVDR TKTIIKNETN SIGEDRNTTV TKNDGLSVKL AQTINIGTTY RLDVGDQFTL RCGNAALVLH KDGSIEFCGK QLMLHTSDVM QLIGKGIDMN PDGGTAVTAD DIAPLPTSE
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