Gene SNSL254_A0231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0231 
Symbol 
ID6483672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp248231 
End bp249388 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content55% 
IMG OID642735668 
Productcarbohydrate diacid transcriptional activator CdaR 
Protein accessionYP_002039450 
Protein GI194443564 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3835] Sugar diacid utilization regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.466297 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value0.982671 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGGCT GGCATCTTGA TACCAAAATG GCGCAGGATA TCGTGGCGCG CACTATGCGC 
ATCATCGATA CCAATATCAA CGTAATGGAT GCCCGCGGGC GTATTATCGG CAGCGGCGAT
CGGGAACGTA TTGGTGAATT GCACGAAGGC GCGCTGTTAG TGCTGTCGCA GGGCCGGGTT
GTGGATATTG ACAACGCCGT GGCGCGACAC CTGCACGGGG TGCGTCAGGG GATTAATCTT
CCCTTACGTC TTGAGGGCGA AATTGTCGGC GTGATCGGCC TCACCGGCGA ACCAGAGCAT
CTGCGTAAAT ATGGCGAACT GGTGTGTATG ACTGCCGAAA TGATGCTGGA GCAGTCGCGG
TTAATGCACC TTTTGGCGCA GGATAGCCGT TTGCGCGAAG AGCTGGTGAT GAACCTGATT
CAGGCCGAAG AAAATACGCC GGCGCTGGTG GAATGGGCGC AGCGTTTGGG GATCGATTTG
AACCAGCCGC GTGTGGCGGC GGTGGTGGAA GTCGACAGCG GCCAGCTTGG CGTCGATAGC
GCAATGGCGG AACTTCAGCA GTTGCAGAAT GCGCTTACCA CGCCGGAGCG TAACAACCTG
ATAGCCATTG TTTCTCTCAC CGAGATGGTG GTGCTCAAAC CCGCCTTAAA CTCGTTTGGT
CGCTGGGATG CTGAAGATCA TCGTAAGCGC GTAGAGCAGC TTATCTCGCG AATGAAAGAG
AATGGTCAGC TACGTTTTCG CGTGGCGCTG GGCAATTACT TTACCGGGCC GGGCAGTATT
GCACGCTCAT ACCGCACGGC GCGCACCACG ATGATGGTCG GCAAACAGCG AATGCCAGAG
AGCCGCAGCT ATTTTTATCA GGATTTGATG CTGCCGGTTC TGTTAGATAG CCTGCGTGGC
GGCTGGCAGG CCAATGAGCT GGCGCGCCCG CTGGTAAAAC TCAAAGCGAT GGATAACAAC
GGGTTATTAC GTCGGACGCT GACGGCGTGG TTTCGCCATA ATGTCCAGCC GCTGGCGACC
TCTAAGGCGC TGTTTATTCA TCGTAACACG CTGGAATATC GGCTAAATCG TATTTCGGAA
CTGACCGGGC TGGATTTGGG AAATTTTGAC GATCGGCTGT TGCTGTATGT GGCGCTACAA
CTGGATGAAC AGCGTTAA
 
Protein sequence
MAGWHLDTKM AQDIVARTMR IIDTNINVMD ARGRIIGSGD RERIGELHEG ALLVLSQGRV 
VDIDNAVARH LHGVRQGINL PLRLEGEIVG VIGLTGEPEH LRKYGELVCM TAEMMLEQSR
LMHLLAQDSR LREELVMNLI QAEENTPALV EWAQRLGIDL NQPRVAAVVE VDSGQLGVDS
AMAELQQLQN ALTTPERNNL IAIVSLTEMV VLKPALNSFG RWDAEDHRKR VEQLISRMKE
NGQLRFRVAL GNYFTGPGSI ARSYRTARTT MMVGKQRMPE SRSYFYQDLM LPVLLDSLRG
GWQANELARP LVKLKAMDNN GLLRRTLTAW FRHNVQPLAT SKALFIHRNT LEYRLNRISE
LTGLDLGNFD DRLLLYVALQ LDEQR