Gene SNSL254_A0164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0164 
SymbolpdhR 
ID6486218 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp177097 
End bp177861 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content56% 
IMG OID642735601 
Producttranscriptional regulator PdhR 
Protein accessionYP_002039383 
Protein GI194442509 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.808215 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones100 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTACA GCAAAATCCG CCAACCAAAA CTCTCCGATG TGATCGAGCA GCAGCTGGAG 
TTTTTAATCC TTGAGGGAAC ATTGCGTCCC GGAGAAAAAC TCCCACCGGA ACGTGAACTG 
GCAAAACAGT TCGACGTCTC CCGTCCCTCC TTGCGCGAGG CGATTCAACG TCTCGAAGCG 
AAGGGATTGT TGCTTCGTCG TCAGGGCGGC GGAACCTTCG TGCAGAGCAG CCTGTGGCAG 
AGCTTTAGCG ACCCGCTGGT GGAACTGCTC TCCGATCACC CTGAATCCCA GTTTGACCTG 
CTCGAAACGC GCCATGCTCT GGAAGGCATT GCGGCTTATT ACGCGGCGCT GCGCAGCACC 
GATGAAGATA AAGACCGTAT TCGCGAGCTG CACCATGCTA TTGAGCTAGC GCAAGAGTCC 
GGCGATCTGG ATGCCGAGTC CGAAGCCGTG CTCCAGTATC AAATCGCCGT CACCGAAGCG 
GCGCACAACG TGGTATTGCT TCATCTGCTA AGGTGTATGG AGCCGATGCT GGCGCAAAAC 
GTGCGGCAGA ACTTCGAATT GCTGTATGCG CGTCGGGAGA TGCTGCCGCT GGTGAGTACG 
CATCGCACCC GTATATTTGA AGCCATTATG GCCGGAAAAC CAGAAGAAGC GCGTGAAGCG 
TCACACCGAC ATCTGGCGTT TATCGAAGAG ATTATGCTGG ACAGAAGCCG TGAGGAGAGC 
CGTCGTGAAC GCGCTTTACG CCGCCTGGAA CAGCGCAAGA ATTAG
 
Protein sequence
MAYSKIRQPK LSDVIEQQLE FLILEGTLRP GEKLPPEREL AKQFDVSRPS LREAIQRLEA 
KGLLLRRQGG GTFVQSSLWQ SFSDPLVELL SDHPESQFDL LETRHALEGI AAYYAALRST 
DEDKDRIREL HHAIELAQES GDLDAESEAV LQYQIAVTEA AHNVVLLHLL RCMEPMLAQN 
VRQNFELLYA RREMLPLVST HRTRIFEAIM AGKPEEAREA SHRHLAFIEE IMLDRSREES 
RRERALRRLE QRKN