| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0057 |
|---|
| Symbol | |
|---|
| ID | 6485845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 61097 |
|---|
| End bp | 61783 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642735501 |
|---|
| Product | transcriptional regulator CitB |
|---|
| Protein accession | YP_002039283 |
|---|
| Protein GI | 194446327 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4565] Response regulator of citrate/malate metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 0.651756 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGCA TTACGACACT CATCGTTGAA GACGAACCGA TGCTAGCGGA AATCCTGGTG
GACACCATCA AGATTTTTCC CCAGTTTTCA ATCGTCGGCA TCGCAGACAA ACTGGAAAGT
GCGAAGAAGC AAATACGCCT CTATCAACCA CAGTTAATTC TATTGGATAA TTTTTTACCC
GATGGCAAAG GGATCGATTT AATTCGTCAT ACCATCAGCA CCAACTACAC AGGGCGAATT
ATTTTCATTA CCGCCGACAA TCATATGGAT ACCATCAGCG ATGCCTTACG CATGGGCGTA
TTCGATTATC TGATTAAGCC GGTACATTAT CAGCGCCTGC AGCATACCCT GGAGCGGTTC
ACCCGTTACC GCAGTTCGTT ACGTTCCAGT GAGCAGGCAA ACCAGACGCA CGTTGATGCC
TTATTTAATA TCCAGGCCAA AGAACAAACC GCAGAACCGA ATAGCGGACT GCGGGGAATT
GATGAAAACA CCTTCAACCG GGTACGACAA ATATTCACCG ACCCGCAGGC AATACATACA
GCAGACACTC TGGCGCAAAT TCTGGGCAGC AGTAAAACCA CTGCCCGACG CTATCTGGAA
CAAGGCGTGA AAAATAACTT TCTCGAAGCG GAGATCAGCT ACGGGAAAGT GGGCAGGCCG
GAGAGACTCT ATCGCGGCAA AGTATGA
|
|---|
| Protein sequence | MDSITTLIVE DEPMLAEILV DTIKIFPQFS IVGIADKLES AKKQIRLYQP QLILLDNFLP
DGKGIDLIRH TISTNYTGRI IFITADNHMD TISDALRMGV FDYLIKPVHY QRLQHTLERF
TRYRSSLRSS EQANQTHVDA LFNIQAKEQT AEPNSGLRGI DENTFNRVRQ IFTDPQAIHT
ADTLAQILGS SKTTARRYLE QGVKNNFLEA EISYGKVGRP ERLYRGKV
|
|---|
| |