| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1194 |
|---|
| Symbol | |
|---|
| ID | 3241829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 1231513 |
|---|
| End bp | 1232388 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637167847 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_188770 |
|---|
| Protein GI | 57867127 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00764454 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA TAGATTCATG GCTAACTAAA CATGGTCTAA AAAATCGACT TACGCTCGTA
GTAATTGTAA TTTTTATTAT ATTTTTAATT TTACTTTTTA TGTTTGTTAA TTTAAGTGAT
GAAGATACAG GTCAAATTAC TATAACTGAG AATGCTGAGT TAAGAACAGG ACCTAATGCC
GCCTATCCTG TTATTTATAA AATAGAAAAA GGCGAAAGTT TTAAGAAAAT AGATCGAAAA
GGGAAATGGA TTGAAGTTCA AAATCACGCT GGCACTGAGA AAGGCTGGGT TGCTGGTTGG
CACACAAATT TGAACATTCC AGCTGATCAA TCACTTTCGT CAAACCCTCT AAAAGGAAAA
ACAATTGTAC TTGACCCTGG TCATGGTGGA AGTGATCAGG GCGCCTCAAG TAGTACACCA
TCTAAAAGTC TCGAAAAAAA TTACACACTT AAAACTGCTA AAGAATTAAA AAAGTTATTA
AATAAGGAAG GTGCTCATGT AAAAATGACT CGTTCCAATG ATAAATATGT GTCCCTAGAT
GATAGAAATA TAAAGGGTGA CGCATTTATT AGTATACATA ATGATGCGCT TGATTCTTCA
AATGCCAATG GAGTGACTGT TTATTGGTTT AAAGACAAGC AAGAAACACT TGCACAAACT
TTAAATTCTG CAATTCAAAA GAAGGCATTA TTGACAAATC GAGGTTCTAG ACAACAAAAT
TATCAAGTGT TGAGACAGAC AGATATACCA GCAGTACTGT TAGAGTTAGG CTATATAAGT
AATCCTACTG ATGAATCAAT GATTAATGAT CAATTACATA GACAAGTGGT TGAACAAGCT
ATTGTTGATG GTTTAAAACA ATATTTCTCG TCCTAG
|
|---|
| Protein sequence | MKKIDSWLTK HGLKNRLTLV VIVIFIIFLI LLFMFVNLSD EDTGQITITE NAELRTGPNA
AYPVIYKIEK GESFKKIDRK GKWIEVQNHA GTEKGWVAGW HTNLNIPADQ SLSSNPLKGK
TIVLDPGHGG SDQGASSSTP SKSLEKNYTL KTAKELKKLL NKEGAHVKMT RSNDKYVSLD
DRNIKGDAFI SIHNDALDSS NANGVTVYWF KDKQETLAQT LNSAIQKKAL LTNRGSRQQN
YQVLRQTDIP AVLLELGYIS NPTDESMIND QLHRQVVEQA IVDGLKQYFS S
|
|---|
| |