Gene SERP1127 details

Gene Information

• Locus tag: SERP1127
• Symbol: rpoD
• ID: 3242916
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Staphylococcus epidermidis RP62A
• Kingdom: Bacteria
• Replicon accession: NC_002976
• Strand: -
• Start bp: 1165795
• End bp: 1166901
• Gene Length: 1107 bp
• Protein Length: 368 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 637167780
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_188703
• Protein GI: 57867102
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.00000000000620377
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGACA ACCAAGTTAA AATTAAAAAG CAAACAATTG ATCCGACTTT AACACTAGAA 
GATGTTAAAA AACAATTAAT TGATAAAGGA AAAAAAGAAG GTCATTTAAG TCACGAAGAA 
ATCGCTGAAA AACTGCAAAA TTTTGAAATG GACTCAGATC AAATGGATGA TTTCTTCGAC 
CAATTGAATG ACAATGACAT TACACTTGTT AATGAAAAAG ATAGTTCTGA CACGGATGAT 
AAAATCAATC CTAATGATTT GAGTGCCCCT CCTGGTGTCA AAATCAATGA CCCAGTGCGT 
ATGTATTTAA AGGAAATTGG TAGAGTTAAT CTTTTAAGTG CTCAAGAAGA AATTGAGCTT 
GCAAAAAGAA TTGAACAAGG TGATGAAATT GCTAAATCAC GATTAGCTGA AGCAAACTTG 
CGTTTAGTTG TTAGTATTGC TAAACGATAT GTTGGTCGTG GAATGTTATT CTTAGATTTG 
ATTCAAGAAG GTAATATGGG CTTAATTAAA GCTGTGGAAA AGTTTGATTT TAGCAAAGGA 
TTTAAATTTT CAACATATGC CACTTGGTGG ATTAGACAAG CTATTACACG AGCAATTGCT 
GACCAAGCAC GTACAATTCG AATACCAGTA CACATGGTAG AAACGATTAA TAAATTGATT 
CGTGTTCAAC GTCAATTATT GCAAGATTTA GGAAGAGATC CAGCTCCTGA AGAAATTGGA 
GAAGAAATGG ATTTACCACC AGAAAAAGTC AGAGAGATTT TAAAAATTGC ACAAGAACCC 
GTTTCATTAG AGACGCCAAT TGGTGAAGAA GATGATAGTC ATTTAGGAGA TTTCATTGAG 
GACCAAGAAG CTCAAAGTCC ATCTGACCAT GCAGCATACG AATTGTTAAA AGAACAATTA 
GAAGATGTTT TAGATACACT TACTGACAGA GAAGAAAATG TTTTACGTTT ACGTTTTGGT 
TTAGATGATG GACGAACAAG AACACTAGAA GAAGTTGGAA AAGTATTCGG TGTAACACGT 
GAAAGAATTC GTCAGATTGA AGCAAAAGCT TTAAGAAAAC TAAGACATCC TAGTCGAAGT 
AAACGTCTTA AAGATTTCAT GGATTAA 

 

Protein sequence

MSDNQVKIKK QTIDPTLTLE DVKKQLIDKG KKEGHLSHEE IAEKLQNFEM DSDQMDDFFD 
QLNDNDITLV NEKDSSDTDD KINPNDLSAP PGVKINDPVR MYLKEIGRVN LLSAQEEIEL 
AKRIEQGDEI AKSRLAEANL RLVVSIAKRY VGRGMLFLDL IQEGNMGLIK AVEKFDFSKG 
FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLI RVQRQLLQDL GRDPAPEEIG 
EEMDLPPEKV REILKIAQEP VSLETPIGEE DDSHLGDFIE DQEAQSPSDH AAYELLKEQL 
EDVLDTLTDR EENVLRLRFG LDDGRTRTLE EVGKVFGVTR ERIRQIEAKA LRKLRHPSRS 
KRLKDFMD