| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1079 |
|---|
| Symbol | lpdA |
|---|
| ID | 3242774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 1124207 |
|---|
| End bp | 1125628 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637167733 |
|---|
| Product | 2-oxoisovalerate dehydrogenase, E3 component, lipoamide dehydrogenase |
|---|
| Protein accession | YP_188656 |
|---|
| Protein GI | 57866999 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAA AACAATACGA TTTAGTCGTG TTAGGTGGTG GTACGGCAGG ATATGTAGCC
GCCATCAGAG CTTCTCAATT AGGAAAAAAA GTAGCGATAG TAGAAAAATC ACTCTTAGGT
GGTACGTGTT TACATAAAGG ATGTATACCT ACTAAAGCAC TTTTAAAATC GGCTGAAGTC
AATCATACTA TTAAAAACGC GCATACATTT GGAATTGATG TCAATCATTT TAAAATTAAT
TTCCCTAAAA TTTTAGAACG TAAAGATGCT ATTGTTAAGC AATTGCATGA AGGCGTCAAT
CAACTGATGA AACATCATCA TATAGATATT TATAACGGTA TTGGACGAAT TATGGGAACA
TCTATATTTT CTCCTCAAAG CGGTACAATT TCTGTGGAAT ATGAAGACGG CGAATCAGAT
ATACTCCCTA ATAAAAATGT GCTTATAGCT ACTGGGTCAT CACCACAGTC TCTTCCGTTC
ATTAAATTTG ACCATAAACA AATACTATCG AGTGATGATA TCCTAAGGTT AAATACACTA
CCACAAAGAT TAGCAATCAT AGGTGGAGGT GTTATTGGTT TAGAATTTGC ATCTCTGATG
AATGATTTAG GTGCTGATGT AGTAGTAATC GAAGCGAATG ACAGAGTTCT TCCTACCGAG
AGCACACAAG TTGCGTCATT GCTAAAAGAA GAATTAACTA ATCGAGGCGT TACATTCTAC
GAAAATATTC AATTGACCAA AGATCATTTT AACCAAACTG ATAAGGGTGT AACTATTAAT
ATTTCAGATG AGCCCGTCCA ATTCGATAAA GTACTTGTTG CAATTGGTAG AAAGCCTAAT
ACAAATGATA TTGGTTTAAA TAACACTCAA ATTAAGACTT CTGATGCTGG TCATATTATA
ACAAATGGTT ATCAGCAAAC TGAAGATAAA CATATATACG CAGCAGGAGA TTGTATAGGG
CAATTACAAT TGGCACACGT CGGTTCAAAA GAAGCTATAG TTGCAGTTGA ACATATGTTT
GATTGTTCTC CTATACCTAT CAATTATGAC CTGATACCAA AATGTGTTTA TACAAACCCA
GAAATTGCTT CAATTGGTAA AAATTTAGAA CAAGCAAAAA AAGCAGGCAT CAAAGCAAAA
AGTATCAAAG TTCCTTTTAA AGCTATAGGA AAGGCAATAA TTGAGGATGT AACCCAATCA
AAAGGATTTT GCGAGATGGT AGTTAACAAA GATGACGATG AAATCATAGG TCTTAATATG
ATAGGGCCAC ATGTTACAGA ATTAATAAAT GAAATTTCAT TGTTACAATT TATGAATGGC
TCATCTTTAG AACTTGGTTT AACAACACAT GCACATCCTT CATTATCCGA GGTAGTCATG
GAATTAGGTT TAAAAGCTAA TGGTCAAGCA ATTCATGTAT AG
|
|---|
| Protein sequence | MSEKQYDLVV LGGGTAGYVA AIRASQLGKK VAIVEKSLLG GTCLHKGCIP TKALLKSAEV
NHTIKNAHTF GIDVNHFKIN FPKILERKDA IVKQLHEGVN QLMKHHHIDI YNGIGRIMGT
SIFSPQSGTI SVEYEDGESD ILPNKNVLIA TGSSPQSLPF IKFDHKQILS SDDILRLNTL
PQRLAIIGGG VIGLEFASLM NDLGADVVVI EANDRVLPTE STQVASLLKE ELTNRGVTFY
ENIQLTKDHF NQTDKGVTIN ISDEPVQFDK VLVAIGRKPN TNDIGLNNTQ IKTSDAGHII
TNGYQQTEDK HIYAAGDCIG QLQLAHVGSK EAIVAVEHMF DCSPIPINYD LIPKCVYTNP
EIASIGKNLE QAKKAGIKAK SIKVPFKAIG KAIIEDVTQS KGFCEMVVNK DDDEIIGLNM
IGPHVTELIN EISLLQFMNG SSLELGLTTH AHPSLSEVVM ELGLKANGQA IHV
|
|---|
| |