| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP0184 |
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| Symbol | rpoC |
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| ID | 3241174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Staphylococcus epidermidis RP62A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002976 |
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| Strand | + |
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| Start bp | 189612 |
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| End bp | 193235 |
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| Gene Length | 3624 bp |
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| Protein Length | 1207 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637166853 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_187780 |
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| Protein GI | 57866135 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0118718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTGATG TAAATAATTT CCATTATATG AAAATAGGAT TAGCTTCACC TGAAAAAATT
CGCTCTTGGT CTTATGGTGA AGTTAAGAAA CCTGAAACAA TAAATTACCG TACACTTAAG
CCTGAAAAAG ATGGTCTATT CTGTGAAAGA ATTTTCGGAC CTACTAAAGA TTGGGAATGT
AGTTGTGGTA AGTACAAACG TGTACGCTAC AAAGGTATGG TATGTGATAG ATGTGGCGTT
GAAGTAACAA AATCAAAAGT GCGTCGTGAA AGAATGGGTC ATATTGAATT AGCAGCACCC
GTATCTCACA TTTGGTATTT CAAAGGAATT CCAAGTCGTA TGGGGCTATT ATTAGATATG
TCTCCTAGAG CATTAGAAGA AGTAATATAC TTCGCTTCAT ATGTTGTAGT TGATCCAGGA
CCAACTGGAC TTGAAAAGAA AACATTATTA TCTGAAGCTG AATTCAGAGA ATATTATGAC
AAGTACCCAA ATCAATTTGT TGCCAAAATG GGTGCAGAAG GTATTAAAGA CCTATTAGAA
GAAATTGATT TAGATGAAGA ATTAAAAGAG TTACGTGATG AGCTTGAATC TGCAACAGGT
CAAAGATTAA CACGTGCGAT TAAACGTTTA GAGGTAGTTG AGTCATTTAG AAATTCTGGG
AATAATCCTT CTTGGATGAT TTTAGATGTA TTACCTATTA TACCACCTGA AATTCGTCCG
ATGGTTCAAT TAGACGGTGG ACGTTTCGCT ACAAGTGATT TAAATGACTT GTATCGTCGT
GTTATCAACC GTAACAACCG TTTGAAACGT TTATTAGACC TTGGAGCACC AGGTATCATC
GTTCAAAATG AAAAACGTAT GTTACAAGAA GCAGTCGATG CTTTAATTGA CAATGGTCGT
CGTGGTCGAC CTGTAACAGG ACCAGGTAAC CGTCCATTGA AATCTCTTTC ACATATGCTT
AAAGGTAAGC AAGGACGTTT CCGTCAAAAC TTATTAGGTA AACGTGTTGA CTATTCAGGA
CGTTCAGTTA TCGCAGTTGG ACCAAGCTTG AAAATGTATC AATGTGGTTT ACCAAAAGAA
ATGGCGCTTG AATTATTTAA ACCATTCGTT ATGAAAGAGT TAGTTCAACG TGAAATTGCT
ACAAACATTA AAAATGCTAA AAGTAAAATT GAACGTATGG ACGATGAAGT TTGGGATGTG
CTTGAAGATG TTATAACTGA GCATCCAGTG CTATTAAACC GTGCTCCAAC ATTACACAGA
TTAGGTATTC AGGCATTTGA ACCTACTCTA GTAGAAGGTC GTGCAATTCG CCTTCACCCT
CTTGTTACAA CTGCTTATAA TGCAGACTTT GATGGTGACC AAATGGCTGT TCACGTTCCG
TTATCAAAAG AAGCTCAAGC TGAAGCACGT ATGCTTATGC TTGCAGCACA AAACATCCTA
AACCCTAAAG ATGGTAAGCC GGTTGTAACA CCATCACAAG ATATGGTTTT AGGTAACTAT
TACCTAACAT TAGAGCGAAA AGATGCCGTG AATACTGGTG CAATCTTTAA CGATACTAAT
GAGGTTTTAA AAGCTTATGC AAATGGTTAT GTACATCTAC ACACTCGTAT TGGTGTTCAT
GCTAATTCAT TCAATAATCC AACGTTTACT GATGAGCAAA ATAGCAAAAT TTTAGCTACA
TCAGTAGGTA AAATTATTTT CAATGAAATT ATTCCTGATT CATTTGCATA CATCAATGAA
CCAAGTCAAG CTAACCTAGA AAGAACGACA CCTGATAAAT ACTTTGTTGA TCCTACGCAA
TTAGGTGAAG GTGGACTAAA AGAATACTTT GATAATACAG AACTTATTGA ACCTTTCAAC
AAAAAGTTCT TAGGAAATAT CATCGCAGAA GTATTCAATA GATTTAGCAT TACTGATACT
TCAATGATGC TTGATAGAAT GAAAGATTTA GGATTCAAAT TCTCATCTAA AGCTGGTATT
ACTGTTGGTG TTTCTGACAT TGTTGTACTT CCAGATAAAC AAGACATTTT AGATGAACAT
GAAAAATTAG TTGAACGTGT GACTAAACAA TATAATCGTG GTTTAATCAC TGAAGACGAG
CGTTACAATG CGGTTGTAGA AATTTGGACT GACGCAAAAG ACCAAATTCA AGGCGAATTA
ATGCAGTCTC TTGAGAAAAC TAACCCAATA TTCATGATGA GTGATTCTGG TGCCCGTGGT
AATGCATCAA ACTTCACTCA ATTAGCTGGT ATGCGTGGTT TAATGGCAGC ACCATCTGGT
AAGATTATAG AATTACCAAT CACATCTTCA TTCCGTGAAG GTTTAACGGT ATTAGAATAC
TTTATTTCTA CACACGGTGC GCGTAAAGGT CTTGCCGATA CAGCACTTAA AACAGCTGAC
TCTGGTTACC TTACTCGTCG TCTTGTTGAT GTAGCACAAG ATGTTATCGT TCGTGAAGAA
GATTGTGGTA CAGACCGTGG TTTATTAGTT TCTGATATAA AAGAAGGAAC TGAAATGATT
GAACCATTTA TCGAACGTAT CGAAGGTCGT TATTCTAAAG AAACAATTCG CCATCCTGAA
ACAGACGAAG TAATTATTCG TCCAGACGAA TTAATAACAC CAGATATTGC AAAACAAATC
ACTGATGCAG GTATTGAGCA AATGTATATA CGCTCAGCAT TTACATGTAA CACACGTCAT
GGTGTATGTG AAAAATGTTA TGGTAAAAAC CTTGCTACTG GTGAAAAAGT TGAAGTGGGT
GAAGCAGTTG GTACAATTGC CGCTCAATCT ATCGGTGAAC CAGGTACCCA ACTTACAATG
CGTACATTCC ACACTGGTGG GGTAGCAGGA AGTGACATCA CTCAAGGTCT TCCTCGTATC
CAAGAAATCT TTGAGGCACG TAATCCAAAA GGTCAAGCTG TGATTACTGA AATCGAAGGT
GTAGTTGATG ATATTAAATT AGCAAAAGAT CGCCAACAAG AAATAATTGT TAAAGGTGCT
AATGAAACTA GATCTTATCT AGCATCAGGT ACTTCAAGAC TTAAAGTTGA AATAGGTCAA
TCTGTTGAAC GTGGTGAAGT TCTAACAGAA GGATCAATTG AACCTAAAAA CTATTTATCT
GTAGCAGGCC TAAATGCAAC TGAAAGTTAC CTATTAAAAG AAGTACAAAA AGTTTACCGT
ATGCAAGGTG TTGAAATTGA CGACAAACAC GTTGAAGTTA TGGTAAGACA AATGTTACGT
AAAGTTCGCA TCATTGAGGC TGGTGACACT AAATTATTAC CAGGTTCATT AGTTGATATT
CATAACTTTA CTGACGCTAA CAGAGATGCA TTCAAACATC GTAAACGTCC AGCTACAGCT
AAACCAGTAT TACTTGGTAT TACTAAAGCT TCTCTGGAAA CTGAAAGCTT CTTATCAGCA
GCTTCATTCC AAGAAACAAC ACGTGTGCTT ACTGATGCAG CTATTAAAGG TAAACGTGAT
GATTTACTTG GTCTTAAAGA GAATGTTATT ATTGGTAAGT TAATTCCTGC TGGTACTGGT
ATGAGACGTT ACAGTGATAT TCAATACGAT AAAGCTACTG CACCAGTAAC AGAAACAAGT
GAAGAAGTTG AAACGATAGA ATAA
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| Protein sequence | MIDVNNFHYM KIGLASPEKI RSWSYGEVKK PETINYRTLK PEKDGLFCER IFGPTKDWEC
SCGKYKRVRY KGMVCDRCGV EVTKSKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLLLDM
SPRALEEVIY FASYVVVDPG PTGLEKKTLL SEAEFREYYD KYPNQFVAKM GAEGIKDLLE
EIDLDEELKE LRDELESATG QRLTRAIKRL EVVESFRNSG NNPSWMILDV LPIIPPEIRP
MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPGII VQNEKRMLQE AVDALIDNGR
RGRPVTGPGN RPLKSLSHML KGKQGRFRQN LLGKRVDYSG RSVIAVGPSL KMYQCGLPKE
MALELFKPFV MKELVQREIA TNIKNAKSKI ERMDDEVWDV LEDVITEHPV LLNRAPTLHR
LGIQAFEPTL VEGRAIRLHP LVTTAYNADF DGDQMAVHVP LSKEAQAEAR MLMLAAQNIL
NPKDGKPVVT PSQDMVLGNY YLTLERKDAV NTGAIFNDTN EVLKAYANGY VHLHTRIGVH
ANSFNNPTFT DEQNSKILAT SVGKIIFNEI IPDSFAYINE PSQANLERTT PDKYFVDPTQ
LGEGGLKEYF DNTELIEPFN KKFLGNIIAE VFNRFSITDT SMMLDRMKDL GFKFSSKAGI
TVGVSDIVVL PDKQDILDEH EKLVERVTKQ YNRGLITEDE RYNAVVEIWT DAKDQIQGEL
MQSLEKTNPI FMMSDSGARG NASNFTQLAG MRGLMAAPSG KIIELPITSS FREGLTVLEY
FISTHGARKG LADTALKTAD SGYLTRRLVD VAQDVIVREE DCGTDRGLLV SDIKEGTEMI
EPFIERIEGR YSKETIRHPE TDEVIIRPDE LITPDIAKQI TDAGIEQMYI RSAFTCNTRH
GVCEKCYGKN LATGEKVEVG EAVGTIAAQS IGEPGTQLTM RTFHTGGVAG SDITQGLPRI
QEIFEARNPK GQAVITEIEG VVDDIKLAKD RQQEIIVKGA NETRSYLASG TSRLKVEIGQ
SVERGEVLTE GSIEPKNYLS VAGLNATESY LLKEVQKVYR MQGVEIDDKH VEVMVRQMLR
KVRIIEAGDT KLLPGSLVDI HNFTDANRDA FKHRKRPATA KPVLLGITKA SLETESFLSA
ASFQETTRVL TDAAIKGKRD DLLGLKENVI IGKLIPAGTG MRRYSDIQYD KATAPVTETS
EEVETIE
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