Gene SAG1426 details

Gene Information

• Locus tag: SAG1426
• Symbol: rpoD
• ID: 1014235
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Streptococcus agalactiae 2603V/R
• Kingdom: Bacteria
• Replicon accession: NC_004116
• Strand: -
• Start bp: 1437270
• End bp: 1438379
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637316601
• Product: RNA polymerase sigma factor RpoD
• Protein accession: NP_688423
• Protein GI: 22537572
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0144524
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGAGA AAAAAGGAAA TACAACTTTT AATGTTCAAG TTGCGGATTT TATTCGCAAT 
CATAAAAAAC AAGGTACTGC AATTGATGAT GAGGTAACAG AAAAACTTGT TATTCCTTTT 
GTTTTAGATG CAGATCAAAT TGATGATTTG TTAGAACGAT TGACAGACGG TGGCATTTCA 
ATCACAGATA AAGAAGGCAA TCCTTCAACA AAGTATGTGG TAGAAGGGCC AAAACCTGAA 
GAATTGACTG ATGAAGAGCT CATAGGAAGT AATTCTGCTA AAGTCAATGA CCCAGTACGT 
ATGTACTTGA AGGAAATTGG TGTTGTTCCT CTTTTAACGA ATGAAGAAGA AAAAGAATTG 
GCTGTTGCGG TTGCTGAGGG AGATTTAATG GCTAAACAAC GTTTAGCTGA AGCAAACCTT 
CGTCTTGTTG TCTCAATTGC AAAACGTTAT GTTGGACGTG GAATGCAATT TCTTGATTTA 
ATTCAAGAGG GTAACATGGG GCTCATGAAA GCTGTTGATA AATTTGATTA TTCAAAGGGA 
TTCAAATTTT CAACTTATGC AACATGGTGG ATTCGTCAAG CTATAACACG TGCAATTGCA 
GATCAAGCAC GTACGATTCG TATTCCTGTT CATATGGTTG AAACGATTAA TAAATTGGTC 
CGTGAACAAC GTAATCTTCT TCAAGAACTT GGTCAAGATC CAACTCCTGA GCAAATCGCA 
GAACGCATGG ATATGACACC AGATAAAGTA CGTGAAATCC TAAAAATTGC TCAAGAGCCG 
GTATCGCTAG AAACGCCAAT CGGTGAGGAA GATGATAGCC ATTTGGGTGA TTTCATTGAA 
GACGAAGTTA TTGAAAATCC AGTAGATTAT ACTACACGTG TTGTTCTTCG TGAGCAATTA 
GATGAGGTTT TAGATACTCT TACTGACCGT GAAGAGAATG TTCTTCGTTT ACGCTTTGGT 
CTTGACGATG GTAAAATGCG TACGTTAGAG GACGTAGGTA AAGTATTTAA TGTTACTCGT 
GAGCGCATTC GTCAGATTGA AGCTAAAGCC CTTAGAAAAC TTCGCCATCC TAGTCGTAGC 
AAGCAACTTA AAGATTTCAT GGAAGATTGA 

 

Protein sequence

MAEKKGNTTF NVQVADFIRN HKKQGTAIDD EVTEKLVIPF VLDADQIDDL LERLTDGGIS 
ITDKEGNPST KYVVEGPKPE ELTDEELIGS NSAKVNDPVR MYLKEIGVVP LLTNEEEKEL 
AVAVAEGDLM AKQRLAEANL RLVVSIAKRY VGRGMQFLDL IQEGNMGLMK AVDKFDYSKG 
FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLV REQRNLLQEL GQDPTPEQIA 
ERMDMTPDKV REILKIAQEP VSLETPIGEE DDSHLGDFIE DEVIENPVDY TTRVVLREQL 
DEVLDTLTDR EENVLRLRFG LDDGKMRTLE DVGKVFNVTR ERIRQIEAKA LRKLRHPSRS 
KQLKDFMED