| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2298 |
|---|
| Symbol | |
|---|
| ID | 4117517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2311245 |
|---|
| End bp | 2312399 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 638037079 |
|---|
| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
|---|
| Protein accession | YP_645039 |
|---|
| Protein GI | 108805102 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.460591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTTTCGA GAAGCTGGCC GCCAAGACGC CTGCTCGCCG CCGCCCTGCC GCTCGTCCTT
CTGGCCTGGG CCGGGCCGGC GGCGCTGGCC CAGCCCTCCG GGGTGGCGGC CGACGCCTGG
GCGCTCGCGG ACCTGCGCAG CGGCGAGCTG CTCGCCTCCC ACGACGCCGG GGAGCGGCTC
CCGATGGCCT CGACCACCAA GATCATGCTC GCCATCGTCG CCCTGCGGGA GGGGGGGCTG
GACCGGGAGG TCGCCGTCTC GCCGCGGGCC GCGGCCTACG CCGCCCCGCC CTACAGCAAC
GTGGGGCTGA GGGCCGGGGA CGTGCTGAGC CTCCGGGAGC TGCTCATGGC CTCCCTCATC
TCCTCGGGGG ACGATGCGGC CTACGCCCTC GCCGAGGCCC TCGGCGGGGG CAGCGTGGAG
CGCCTGGTGG AGAAGATGAA CCGGGAGGCC CGGCGCCTCG GGCTCGAGGA CACCCACTTC
CAGAACCCCG TCGGGCTCGA CGGGAGGCGG CACCGCTCCA GCGCGCGCGA CCTCGTGCGC
ATGTCCCGCG AGGCCATGCA GTATCCCCTC TTCAGGGAGA TCGTGGCCAC GCGCTACGCC
GTGATCTCCA CCCCGGACCG CGAGATACCG CTCACCAACA CCAACGAGCT GCTCTTCACC
TACCCGCCCG CCACCGGGAT AAAGACCGGG ACCACCCCGG CCGCGGGGCC CTGCCTCGTC
GCCTCGGCCG CATCGGGCGA CGAGTCGTAC GTGGCCGTCG TCCTCGACGC CCGCGCGGAC
CGCTTCGCCG CCTCGCTGCG GCTGCTGGAG TACGGCTTCT CGGCCTACGA CCGCCGGGAG
CTCGTCCGCC GCGGCGAGCG CTACGCCAGC GTGGAGGTCC CCTACCGGCG GGGCGAGCGC
GTGCCGCTGG TGGCCGGGGA GAGCCTCAGC GCGCTTCTGG GTCCCGGCGA CCGCGTGCGG
CGGGAGGTGG AGGTCCCCGA CGAGCCTCCC GGCTCCGCCC GGCGCGGGGA GAGGCTCGGG
AGGGTCGTCG TGTGGGTCGG CGGGGAGCGG GCGGGGAGCG TCCCGCTCGT CGCGGCGCGC
GGCTACGAGG AGGCCTCCCT GTGGGAGAAG CTGTGGTATA CAGTTGAGGG CTTCTTCTCG
GAAGAGGGAG GGTGA
|
|---|
| Protein sequence | MLSRSWPPRR LLAAALPLVL LAWAGPAALA QPSGVAADAW ALADLRSGEL LASHDAGERL
PMASTTKIML AIVALREGGL DREVAVSPRA AAYAAPPYSN VGLRAGDVLS LRELLMASLI
SSGDDAAYAL AEALGGGSVE RLVEKMNREA RRLGLEDTHF QNPVGLDGRR HRSSARDLVR
MSREAMQYPL FREIVATRYA VISTPDREIP LTNTNELLFT YPPATGIKTG TTPAAGPCLV
ASAASGDESY VAVVLDARAD RFAASLRLLE YGFSAYDRRE LVRRGERYAS VEVPYRRGER
VPLVAGESLS ALLGPGDRVR REVEVPDEPP GSARRGERLG RVVVWVGGER AGSVPLVAAR
GYEEASLWEK LWYTVEGFFS EEGG
|
|---|
| |