| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2255 |
|---|
| Symbol | |
|---|
| ID | 4115198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2265639 |
|---|
| End bp | 2266979 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638037034 |
|---|
| Product | general substrate transporter |
|---|
| Protein accession | YP_644997 |
|---|
| Protein GI | 108805060 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000684239 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAACCC AAGCAGCAAG AATGTCGTTT GAGGATATAC CGCGCAATAG CTTCCACTGG
AAGATAGCGA TCTACTCGGC GGGCGGGCCG TTTTGTGACG GTTACATACT GGGCATCATT
GCGCCTGCTC TTGCGGTGCT GACGCCGCAG CTCGATCTCT CGGCGTTGAT GGTCAGCCTG
ATCGGCGCTG CCACGCTGGT CGGCATCTTC ATCGGCGGGT TGCTCTTCGG CTACGTCACG
GACATTCTTG GTCGTCAGAT TATGTATGTC TTGGATCTGG CGACGTTTGT CGTCGCTTCT
GTGCTCCAGT TCTTTATCGG CGAGGGGTGG CAGCTGATCG TGCTGAGGCT CATATTGGGT
GTGGCGATTG GCGCCGATTA CCCTATTGCC ACGGCCCTGA TGACGGAATT TACGCCGCGC
AGGCACCGTG GGTTCTTTCT CAGCTTCTGC GTCTTCGGTT GGTGGGTGGG CTTCGCGGCG
GCCTACGTCG TGGGATATTT TCTCGTGGGC GTGGGCGAGG AGAGTTGGCG GTGGATGCTG
GCGAGCAGCG CCGTGCCGGC AGCTATAATC CTCCTGCTCC GTCTGGGCAC TCCTGAGTCC
CCTCGTTGGC TGGCCAGCAA GGGTCGTGTC CAGGAGGCGC TTGCTGTCGT GAGAGAAGCC
TTCGGCGAGA ATGCCGATTT GGGTGATCTC CCGCCTGAAC CGCCTAGGAC CTCGTTCTGG
AACATCTTCC GCCGAGGATA TGCCAAGCGG ACCGTGTTCG CGGGCGCGTT CTGGCTGCTG
CAGGTCACGC CTCTGTTCGC CATATTCACG TTCGCACCGA CGATCCTTGA GGCTTTCAAT
CTCGGTGGGG GCAGAGCGTC GTACCTAGGC TCCGTGATCA TAAGCCTCTT CGCGGTTGCC
GGGCTCTTTC CCGCCATGTA TCTTGTCGAT CGTCTGGGGC GGCGTCCGGT ACTGATATGG
CCCTTCTTCA TAACGGGTAT CGCTCTACTG ATCCTTGGTA TTGCTCCCAA GAGTCCAGCA
TGGGTCATCA TAACTCTCTT TGTAGTCTTC TCCTTCTTCA ACTCTGGCTC GAGCGTGCTG
CAGTGGATCT ATCCCAACGA ACTGTTCCCG ACGGAGGTTA GAGCCACGGC CATGGGGTTC
GCTACTGCGG TGAGTCGTAT CGGCGCTGCG ATAGGGACGT TCCTTCTGCC GCTGTTGCTT
TCTAGCATCG GCATCGGGCC GACCATGATT ATCGCGGCGG TGCTGTGCTT TATAGGATTC
GTAATGAGCT GGTTCATGGC CCCGGAGACA AAAGGCCTCA CCCTGGATGA GGCCAGCATG
GTCCGTGAAC CGGTTTCCTA A
|
|---|
| Protein sequence | METQAARMSF EDIPRNSFHW KIAIYSAGGP FCDGYILGII APALAVLTPQ LDLSALMVSL
IGAATLVGIF IGGLLFGYVT DILGRQIMYV LDLATFVVAS VLQFFIGEGW QLIVLRLILG
VAIGADYPIA TALMTEFTPR RHRGFFLSFC VFGWWVGFAA AYVVGYFLVG VGEESWRWML
ASSAVPAAII LLLRLGTPES PRWLASKGRV QEALAVVREA FGENADLGDL PPEPPRTSFW
NIFRRGYAKR TVFAGAFWLL QVTPLFAIFT FAPTILEAFN LGGGRASYLG SVIISLFAVA
GLFPAMYLVD RLGRRPVLIW PFFITGIALL ILGIAPKSPA WVIITLFVVF SFFNSGSSVL
QWIYPNELFP TEVRATAMGF ATAVSRIGAA IGTFLLPLLL SSIGIGPTMI IAAVLCFIGF
VMSWFMAPET KGLTLDEASM VREPVS
|
|---|
| |