Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rxyl_2092 |
Symbol | |
ID | 4117599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rubrobacter xylanophilus DSM 9941 |
Kingdom | Bacteria |
Replicon accession | NC_008148 |
Strand | + |
Start bp | 2119663 |
End bp | 2121300 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 638036878 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_644848 |
Protein GI | 108804911 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.403433 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGGGAAG AGCGCTACAG GGAGCTTTTC CGGTATGCGC CGGAGGGTGT GATCTCGTTG GACGCCGGAG GGCGGGTGCT GGGGACGAGC GGCTCCCTAC GGGGACTCCT CCCGGAGGAA CCGTGCGGGG AGCGCCTCCT CCGGCTCGTC CCGCCCGGCG AGCAGGAGAT GGTCTCGCGC GCCGTGCAGG GCGCGCTCCG GGGCGAGCTG CGGGAGATGG AGATCCCCTG CTCCGGGGGG CGGAGGCTGC ACCTGACGCT CGTGCCCGCC AGGACCGGCG AAGGGGTCGT GGGCGTCTCC GTGGTGGTGC GCGACGTGAC CGGCCGGCGG GCCCTGGAGG AGCAGCTCCT GCGCGAGGCG CTCATGGACC CGCTCACAGG GCTGCTCAAC AGGACCCTCT TTCTCGACCG GCTGGAGCAC GCCGCGTGCC GGTCCCGGCA CGCGGCGATC GCGCTGCTGT ACATGGACCT CGACGGCTTC AAGGAGATAA ACGACACCTT CGGGCACGAG GCCGGGGACG AGGTGCTCCG GGAGGTCGCC CGCAGGCTGC GCTCCGGGCT GCGGCCCGGG GACACGGCGG CCCGGATCGG GGGCGACGAG TTCGGCATCC TCCTCGAGGA CTCCAGGGCC TCCGAGGCCC TCCGGGTGGC CCGCAGGCTG CTGGAGGATC TGCGGGAGCC CATCGCGGCC GGAGAGCGTA GGGTTTGCGT GGCGGCCAGC GTGGGGATAG CCGCCGGACG CGGCGAGGAC CGCGGCGCCC TGCACCTGAT GAGGAGGGCG GACCTCGCGA TGTACCGGGC CAAGCAGCGG GGCAAGAACC GCTGCGAGGT CTTCGACCCC GCCGCGACCC CGCAGGCCCT GGAGCGTGCC GGGGTCCGGG AGGCGCTCCA GCAGGCCATG GACCGGGGAG AGTTCACCGT CCACTACCAG CCCGTCGTCG CGCTGGCGCG GGGCGGGCGA CCGGTCGCCG TCGAGGCCCT GGCCCGCTGG AGGCACCGGC ACCTGGGCCT GATGCTCCCC GACCAGTTCA TCCTCTCCGC CGAGCAGACC GGCATGATCG TGCCGCTCGG CCAGCTGGTG CTGGAGGAGG CGTGCCGGAC CGCGGCGCGC TGGCGGCAGA GCGGCCGCCG GCTGCGGCTC GGCGTCAACC TCTCCCCCCG GGAGCTGTGG CAGCAGGACC TGCCGGAGAG GGCCGCCGCG GCGCTCCGGA GGGCGGGCCT CGGCCCCCAG GACCTGCAGC TGGAGCTCGC CGAGAGCGCA CTGCTGCAGG AGCCGGAGGC CGCCGCCGGC CTCCTGCACA GGCTCGGAAG GCTCGGGATA GGGGCGGCCA TCGACGACTT CGGCGGCGCC CGCTCCCCGC TCGGCCTCCT CGGGCGCTTT GCGGCAGACG GCCTCAAGCT CGACCGCTCG TTCGTCCGGG GGCTGGAGAA GAGCCGGGAG GAGGCGGCGA TCGCGCGGGC GGTCATAGAG CTCGCCCACC GCCTGGGGAT GCAGGTCACC GCGAAGGGCG TGGAGACGGA GGCGCAGGCG ACCCTGCTGC GCGGCATGGG GTGCGACCTC GCCCAGGGCC ACCTCTTCTC CCCGCCGCTC CCCGAGCGGG AGCTGGGCCT CCACGCGGGT GCTACCCCGT CCGTCTAG
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Protein sequence | MREERYRELF RYAPEGVISL DAGGRVLGTS GSLRGLLPEE PCGERLLRLV PPGEQEMVSR AVQGALRGEL REMEIPCSGG RRLHLTLVPA RTGEGVVGVS VVVRDVTGRR ALEEQLLREA LMDPLTGLLN RTLFLDRLEH AACRSRHAAI ALLYMDLDGF KEINDTFGHE AGDEVLREVA RRLRSGLRPG DTAARIGGDE FGILLEDSRA SEALRVARRL LEDLREPIAA GERRVCVAAS VGIAAGRGED RGALHLMRRA DLAMYRAKQR GKNRCEVFDP AATPQALERA GVREALQQAM DRGEFTVHYQ PVVALARGGR PVAVEALARW RHRHLGLMLP DQFILSAEQT GMIVPLGQLV LEEACRTAAR WRQSGRRLRL GVNLSPRELW QQDLPERAAA ALRRAGLGPQ DLQLELAESA LLQEPEAAAG LLHRLGRLGI GAAIDDFGGA RSPLGLLGRF AADGLKLDRS FVRGLEKSRE EAAIARAVIE LAHRLGMQVT AKGVETEAQA TLLRGMGCDL AQGHLFSPPL PERELGLHAG ATPSV
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