| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1679 |
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| Symbol | |
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| ID | 4117164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rubrobacter xylanophilus DSM 9941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008148 |
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| Strand | - |
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| Start bp | 1697403 |
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| End bp | 1699493 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 638036478 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_644452 |
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| Protein GI | 108804515 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.962871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTGA AGCCTTTCGG TGCGACGGAC AACCTCTGGG ACCCCGCGAG GGCGGAGGGC
CTCTCCCCGC TGGAGGAGCT GGCCTACCGC TCCAACCTGC TCGGGAGCGA CCGCGCGGTC
GCCAACTACG GCGGGGGCAA CACCTCGATG AAGCTCCGGC AGGAGGACCA CGCCGGCAGG
GAGATAGACG TCCTCTGGGT CAAGGGGTCG GGGAGCGACC TCGCCACCAT AAGACCCGAG
CAGTTCACGG GGCTGAGGCT CGCCGAGATC CTGCCGCTCA TGGAGCGCGA CTCCATGACC
GACGAGGAGA TGGTCTCCTA CCTCGCCCGC TGCCAGCTTG CCCCCGACAT GCCCCGCTCC
TCCATCGAGA CGCTCCTGCA CGCCTTCATC CCCCACCCCC ACGTGGACCA CACCCACCCG
GACGCGGTGA ACATGCTCTG CTGCGCCGCG AACGGGGAGG AGCTGGCGCG CGAGTGCTTC
GGGGACGAGG CGGTCTGGAT CCCCTACCTG CGCCCGGGGT TCGACCTCTC CAAGAAGGTG
GCCGCGGCGG TGCGGGGCAA CCCGCGGGCC CGCTTCGTCC TGCTGGCGAA GCACGGGCTC
GTCACCTGGG GCGAGACCGC GGAGGAGTCC TACGCCCGCA CGGTCGAGGC CGTGAACCGT
GCCGCGGAGT TCGTCTTTCG GCGGGCCTCG CGGACCGAGG CCTTCGGCGG CCGCAGGCTC
GACCCCCCTC CGGAGGAGGA GCGGCGAAGG CTCTTGGCCG CGGTGCTCCC CGCCCTGCGC
GGCGAGCTCT CCTCCCGCGG CGGGCCCAAG ATCCTGCGGG CGGACACCTC GCCGGACGTC
ACGGGCTTTG TCTGCGGCAG GGACTCGGGG GAGCTCTCCC AGGTGGGGGC GGCCTGCCCG
GACCACCTGG TGCACACCAA GGTCCGGCCC CTCTGGGTGG ACTTCGACCC CGCGAGCGAG
GGCGTCGACG CGCTGGAGCG CCGCCTGCGC GAGGGGGTCC GGCGCTACCG GGAGCGGTAC
GAGGAGTACT TCCGGCGCAA CCGCGCCCGC GTGGGGCGGG GCGACGAGCA GATGCACGAC
CCCAACCCGC GGGTCGTGCT GATCTCCGGG GTCGGGCTGG TGGCGGCCGG GAGGGACCTG
AAGGCCGCCA CCCTCGCCCG CGACCTCTAC CACCGGGCGA TCTCCGTGAT CCGGGGGGCC
TCCTCCGTGG ACCGGTTCGT CTCCCTGGAC GAGGAGGAGA GCTACCGCGT CGAGTACTGG
CCGCTCGAGC TCTACAAGCT CACCCTGGCC CCCCCGCCGA AGGAGCTCGC GGGCCGGGTG
GCGCTGGTGA CCGGCGGCGC GGGCGGCATC GGGAGCGCGG TGGCCGAGAG GCTGCACGAG
GCCGGGGCCT GCGTGGTGGT GGCCGACCTG GACGGCGAGG GGGCCTCGGA GGTCGCCTCC
CGCCTGGGGC CGGAGGGGCT GGCGGTGCGC GCCGACGTCA CCAGCGAGGA GGAGGTGGCG
CGGGCCTTCC GCGCCGCGGC GCTCGCCTAC GGCGGGGTGG ACGTCGTGAT CTCCAACGCC
GGGCTGGCCT CGAGCGCGCC CCTGGAGGAG ACCTCCCTGG ACCTCTGGCG GAGAAACCAC
GCGGTGCTCT CGGAGGGGTA CTTCCTGGTC TCGCGGGAGG CCTTCGCCCT CCTGAAGCGG
CAGGGCATCG GGGGGAGCAT CGTCTTCGTC GGCTCGAAGA ACGCCCTGGC CGCGGGAAGA
AACGCGGCCG CCTACTCCTC CGCCAAGGCC GCCGAGCTGC ACCTGGCCCG CTGCCTGGCG
GAGGAGGGCG GGCCCCACGG CATCCGGGTG AACACGGTGA ACCCCGACGC CGTGCTGCAG
GGCTCGCGCA TCTGGGATTC GGCCTGGAGG GAGGAGCGGG CCCGCGCCTA CGGCATAGAG
CCCGGCGAGC TGGAGGAGTA CTACCGGAAC AGGACCGCGC TGAAGACTAA CGTCTACCCG
GAGGACGTGG CCGAGGCGGT GCTGCACTTC GCCTCCGGGC GGCGCTCGGG GAAGAGCACC
GGCAACGTGC TGAACGTCGA CGGCGGGGTC CGGGAGGCCT ACCCGAGGTA G
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| Protein sequence | MDLKPFGATD NLWDPARAEG LSPLEELAYR SNLLGSDRAV ANYGGGNTSM KLRQEDHAGR
EIDVLWVKGS GSDLATIRPE QFTGLRLAEI LPLMERDSMT DEEMVSYLAR CQLAPDMPRS
SIETLLHAFI PHPHVDHTHP DAVNMLCCAA NGEELARECF GDEAVWIPYL RPGFDLSKKV
AAAVRGNPRA RFVLLAKHGL VTWGETAEES YARTVEAVNR AAEFVFRRAS RTEAFGGRRL
DPPPEEERRR LLAAVLPALR GELSSRGGPK ILRADTSPDV TGFVCGRDSG ELSQVGAACP
DHLVHTKVRP LWVDFDPASE GVDALERRLR EGVRRYRERY EEYFRRNRAR VGRGDEQMHD
PNPRVVLISG VGLVAAGRDL KAATLARDLY HRAISVIRGA SSVDRFVSLD EEESYRVEYW
PLELYKLTLA PPPKELAGRV ALVTGGAGGI GSAVAERLHE AGACVVVADL DGEGASEVAS
RLGPEGLAVR ADVTSEEEVA RAFRAAALAY GGVDVVISNA GLASSAPLEE TSLDLWRRNH
AVLSEGYFLV SREAFALLKR QGIGGSIVFV GSKNALAAGR NAAAYSSAKA AELHLARCLA
EEGGPHGIRV NTVNPDAVLQ GSRIWDSAWR EERARAYGIE PGELEEYYRN RTALKTNVYP
EDVAEAVLHF ASGRRSGKST GNVLNVDGGV REAYPR
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