| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_1482 |
|---|
| Symbol | |
|---|
| ID | 4116148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 1502280 |
|---|
| End bp | 1503197 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 638036274 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_644256 |
|---|
| Protein GI | 108804319 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.696906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGGGG AGTCTTTCCG CGTCTCTCCC TCCGAGGCCG GGGAGCGGCT CGACCGCCTG
CTCGCCCGGC GCCTCGGGAT CAGCCGCAGC CGGGCGCAGC GGCTGCTGGC CGAGGGGCTC
GCCCGGGTCG GCGGTGAGGC GGCGGCCCCG TCCCTCAGGG TGCGGGGGGG CGAGGTGGTC
GAGGCGCGGC TGCCCGAGGA GGGGCTCGAG GCCGAGGAGA TCCCGGTTCC CATCCTCTTC
GAGGACGAGC ACATCGCCGT CGTGGACAAG CCCGCCGGGA TGGTGGTGCA CCCCGGGGCC
GGGAACCGCT CCGGGACGCT GGTCAACGCG CTGCTCGGGC GCGGCATAGC GGGGGGGGAG
GACCCCGAGC GGCCGGGCAT CGTGCACCGC CTCGACCGGG ACACCTCCGG CCTGATGGTC
GTGGCGAAGG GCGAGCCCGC CTACTCGCGG CTCGTGGAGA TGCTGGCCGC CCGGCGGGTG
CGGAGGGTCT ACCGGGCGCT CGTGGTCGGC GAGGGGCTGC CGCCCTCCGG CACGGTGGAC
TCCCCGGTGG GGAGGGACCC GGAGAACCCG GCGCTCATGG CCGCGGGCGT CGGCCGGCCG
GCGGTGACCC ACTTCGAGGT GCTCGGGGAG GCCGCCGGGC ACACCATGCT GCGGGTGCGC
CTGGAGACGG GGAGGACGCA CCAGATCCGG GTGCACCTCT CGGCCATAGG GTATCCCGTC
TACGCCGACC CGCTCTACGG CCGGGCCGTG CCGGGCAGGA GGCTGTGGCT GCACGCCGAG
CGGCTCTCCT TCGAGCACCC GGCGGAGGGG AGGCCGCTGG ACTTCTTCTC CCCCGTCCCG
GAGGAGCTGC GCCGGGCGGC CGCGGAGCTC GACGCGCGCT TCGAGGAGCT TCTTGACGGC
CCGGCGGCTC TCTGGTAG
|
|---|
| Protein sequence | MVGESFRVSP SEAGERLDRL LARRLGISRS RAQRLLAEGL ARVGGEAAAP SLRVRGGEVV
EARLPEEGLE AEEIPVPILF EDEHIAVVDK PAGMVVHPGA GNRSGTLVNA LLGRGIAGGE
DPERPGIVHR LDRDTSGLMV VAKGEPAYSR LVEMLAARRV RRVYRALVVG EGLPPSGTVD
SPVGRDPENP ALMAAGVGRP AVTHFEVLGE AAGHTMLRVR LETGRTHQIR VHLSAIGYPV
YADPLYGRAV PGRRLWLHAE RLSFEHPAEG RPLDFFSPVP EELRRAAAEL DARFEELLDG
PAALW
|
|---|
| |