Gene Rxyl_1406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_1406 
Symbol 
ID4116483 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand+ 
Start bp1427782 
End bp1428855 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content68% 
IMG OID638036198 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_644180 
Protein GI108804243 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.868868 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGAGA CAACCGTGAG AGAGCGCCCG GTCACCAGCC GCCGGATCAT GGTGGGCGAC 
GTGCCCATCG GCGGCGGGGC GCAGATAGTC GTACAGTCCA TGACCAACAC CCCGACGCAC 
GACGTCGAGG CGACGGTGCA GCAGATCTAC GACCTCAACG CCGCCGGAGC GGAGCTGGTG 
CGGGTCTCGG TGAACGGCTC CAAGGCGCTC AAAGGCTTCC GGGAGATCGT GCCGCGCTCG 
CCGGTGCCGC TGATCGCGGA CATCCACTTC GACTACCGGA TGGCGCTCGG GGCGGCGGAT 
GCCGGGGCGG CGTGCGTCCG CATAAACCCG GGGAACATCG GCAGCGACGA CCGCTTCCGG 
AAGGTGATAG AGAAGTGCCA GGAGAAGGGC ATCGCGATGC GCATCGGGGT CAACTCCGGC 
TCGGTCGAGA AGCGGTTCTG GCACCTTCCG AAGGCCGAGG CCATGGTGGC GAGCGCGCTG 
CACAAGGTGG AGATCGCCGA GGAGATGGGC TTCTACGACT TCAAGGTCTC GCTGAAGGCG 
AGCCACGTGC CCGTCATGGT GGAGGCCAAC AAGAAGTTCC GGGAGCACTC CGACGCGCCG 
CTGCACCTCG GGGTGACCGA GGCCGGGACC AAGCTGCCGG GCGCGATCAA GAGCGCCGCG 
GCGCTGGGGC AGCTGCTCCC CTACGGCATC GGGGACACCA TAAGGATCTC GCTGGCCGAG 
GACCCGCTGG AGGAGCTGCC GGTGGCCTAC CAGATCCTCT CGGCCCTCGA GCTTCGCCAC 
CGCGGCCCCA ACGTCATCGC CTGCCCCAGC TGCGCGCGCA CGCTCGGCTT CGACGTGATC 
GGGATGGCCG CCAGGGTGGA GGAGCGTCTC AGGGACTACG AGGACCACTT CACCGTCGCG 
GTGATGGGTT GCATCGTCAA CGGCCCCGGC GAGGCCCGCG ACGCGGACTA CGGGGTGGCC 
GGCGGCAAGG ACGACGGCGT GATCTTCGCG AAGGGCAGGC CGCTGCGCAA GGTGCACCGG 
GACGAGATCT TCGACGCCCT CTTCGAGGAG ATAGAGAAGG ACGGCAGGAA GTAG
 
Protein sequence
MTETTVRERP VTSRRIMVGD VPIGGGAQIV VQSMTNTPTH DVEATVQQIY DLNAAGAELV 
RVSVNGSKAL KGFREIVPRS PVPLIADIHF DYRMALGAAD AGAACVRINP GNIGSDDRFR 
KVIEKCQEKG IAMRIGVNSG SVEKRFWHLP KAEAMVASAL HKVEIAEEMG FYDFKVSLKA 
SHVPVMVEAN KKFREHSDAP LHLGVTEAGT KLPGAIKSAA ALGQLLPYGI GDTIRISLAE 
DPLEELPVAY QILSALELRH RGPNVIACPS CARTLGFDVI GMAARVEERL RDYEDHFTVA 
VMGCIVNGPG EARDADYGVA GGKDDGVIFA KGRPLRKVHR DEIFDALFEE IEKDGRK