Gene Rxyl_0005 details

Gene Information

• Locus tag: Rxyl_0005
• ID: 4115664
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 4458
• End bp: 6392
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 638034797
• Product: DNA gyrase subunit B
• Protein accession: YP_642798
• Protein GI: 108802861
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01059] DNA gyrase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.375435
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGTAGCCA GGACCGCAGC CAAGCATTCC AAGAGCGACT ACGATGCAAG CTCCATCCAG 
GTTCTGGAGG GGCTTGAGGC CGTCAAGCGG CGGCCGGGGA TGTACATCGG CTCCACCGGG 
CCGCGGGGGC TGCACCACCT CGTATGGGAG ATCGTGGACA ACTCCATAGA CGAGGCCCTC 
GCCGGGTACT GCACGGAGAT AAGCGTCACC GTGCACCCGG ACAACTCCGT GACCGTCTCC 
GACGACGGGC GCGGCATGCC GGTGGGGGTC ATGGAGAAGT ACGGCAAGTC CGCCGCCGAG 
GTCATCATGA CCACGCTGCA CGCCGGCGGC AAGTTCGACG GCCAGACCTA CAAGGTCTCC 
GGCGGCCTGC ACGGCGTGGG GGCCTCGGTG GTAAACGCCC TCTCGGAGTG GCTGGAGCTC 
GAGATAAGGC GCGACGGCCA CCTCTGGACC CAGCGCTACG AGCGGGGCTT CCCCGTCACC 
GGGCTCGAGC GGGGCAGGAA GCTCGGCAAG CGGGAGGGGA CGGGCACGAC CGTGAGGTTT 
CGGCCCGACC CCCAGATCTT CGAGACCGTC GAGTTCTCCT TCGACACCCT GAGCCGCCGC 
TTCAGGGAGT CCGCCTTTCT CAACAAGGGG CTCAGGATAA GGCTCGCCGA CGAGCGGGAG 
GAGGGGCGCG AGGTCGTCTA CCGCTACGAG GGGGGCATAA AGGACTTCGT GGCCCACATA 
AACGAGGCCA AGGACCCGGT CCACAAGACC ATCCTCTACT TCCACCGGGA GGAGGAGGCC 
GGCGACGTGG AGGTCGCCAT GCAGTGGAAC TCCGGGTACC AGGACTCGGT TTTCACCTTT 
GCCAACAACA TCAACACCCA CGAGGGCGGC ACGCACCTCT CGGGCTTCAG GGCCGCGCTG 
ACCAGGACCA TCAACGAGTA CGCCCGTCAG AAGGGGCTGC TCAAGGAGAA GGAGGAGAAC 
CTCACCGGCG ACGACATCCG GGAGGGGCTT GCGGCGGTCA TCTCCGTCAA GCTGCGCGAG 
CCGCAGTTCG AGGGGCAGAC CAAGACCAAG CTGGGGAACA CCGAGATAAA GGGGCTCGTC 
GAGAGCGCCA CCAACCGGCA TCTGGCCGAG TTTCTGGAGG AGAACCCGGG CCAGGCGCGG 
GCCATCGTGA CCAAGGCCAT AAACGCGAGC CGGGCGCGCC TTGCGGCCAG CAAGGCCCGC 
AAGGCCATAA GAAAGGGGTA TCTGGAGAGC TCCACGCTCC CCGGCAAGCT CGCCGACTGC 
TCCTCCAAGG ACCCGGCCAG GAGCGAGCTG TACATCGTGG AGGGCGATTC GGCGGGCGGG 
TCGGCCAAGC AGGGCAGGGA CCGCAACTTC CAGGCCATCC TGCCGCTGCG CGGCAAGATC 
CTCAACGTCG AGAAGGCCAA CATAAACAAG GTGCTCTCCA ACGCCGAGAT ACAGGCCATG 
ATCAGCGCGA TCGGGGCCGG CGTGGGCGAC TCGTTCAACA TCGAGGAGGC GCGCTACCAC 
AAGATCGTCA TCATGACCGA CGCCGACGTG GACGGCAGCC ACATAAGGAC GCTCGTTCTG 
ACCTTCCTCT ACCGGAACAT GCCCGAGCTC ATAGAGGCCG GCTACGTCTA CATCGCGCAG 
CCTCCGCTCT ACAAGATCAC CCACAACCGG CGCGACGTCT ACGTCTACAG CGACGCCGAG 
CTGCAGGAGA CCCTGCGGCG GCTGCGGGCC GACGGCAGCG CCACCGTCTC GCGCTTCAAG 
GGGCTCGGGG AGATGAACCC GCAGCAGCTC TGGGAGACCA CCATGGACCC GGCCAACCGG 
ACGCTGCTGC AGGTCACCAT CGACTCCGCG GCCACCGCCG ACGAGCTCTT CACCGCGCTC 
ATGGGCGACA AGGTAGAGCC GCGCAAGGCG TTTATAGAGG CGAACGCCAG GGAGGCGAAG 
AACATAGATG CTTGA 

 

Protein sequence

MVARTAAKHS KSDYDASSIQ VLEGLEAVKR RPGMYIGSTG PRGLHHLVWE IVDNSIDEAL 
AGYCTEISVT VHPDNSVTVS DDGRGMPVGV MEKYGKSAAE VIMTTLHAGG KFDGQTYKVS 
GGLHGVGASV VNALSEWLEL EIRRDGHLWT QRYERGFPVT GLERGRKLGK REGTGTTVRF 
RPDPQIFETV EFSFDTLSRR FRESAFLNKG LRIRLADERE EGREVVYRYE GGIKDFVAHI 
NEAKDPVHKT ILYFHREEEA GDVEVAMQWN SGYQDSVFTF ANNINTHEGG THLSGFRAAL 
TRTINEYARQ KGLLKEKEEN LTGDDIREGL AAVISVKLRE PQFEGQTKTK LGNTEIKGLV 
ESATNRHLAE FLEENPGQAR AIVTKAINAS RARLAASKAR KAIRKGYLES STLPGKLADC 
SSKDPARSEL YIVEGDSAGG SAKQGRDRNF QAILPLRGKI LNVEKANINK VLSNAEIQAM 
ISAIGAGVGD SFNIEEARYH KIVIMTDADV DGSHIRTLVL TFLYRNMPEL IEAGYVYIAQ 
PPLYKITHNR RDVYVYSDAE LQETLRRLRA DGSATVSRFK GLGEMNPQQL WETTMDPANR 
TLLQVTIDSA ATADELFTAL MGDKVEPRKA FIEANAREAK NIDA