Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_3644 |
Symbol | |
ID | 4898756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009050 |
Strand | - |
Start bp | 742286 |
End bp | 744148 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640114252 |
Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
Protein accession | YP_001045506 |
Protein GI | 126464393 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.173742 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAACAG CAGAAGAATT CGACGTGGGA GACCTCAGCG AGAACGAGTC GGCGCGGCCG GGCTCGCGCT TCATGCGGCC GGTCGAGGCG ATCGCGGCCC TGCTTCTGGT GGCGGTGATC GGCCTGCTGC TGACCGGGGT CGTCTCGCGC TATCTCGTCA ACCTCCCCAT CATCTGGATC GAGGAAGCGG CCTCGATCTG CTTCATCTGG CTCGCCATGC TGGGCGCGGC GATCTCGCTC GACCGCAACG AGCATCTGCG GCTCACGCTC TTCGTCCGGA TGCTGCCGCG GCGCGCCGAG GAATTCGTCG AGACCTTCGC CATGGTCATC GTCGGCACCT TCCTCGTGGC GCTGATGCGC GACAGCTTCG AATATGCCTA CGAGGAATGG TTCATCACCA CCGCGGCGCT GCATATTCCG AACACCTACC GCGTCGCCGC GATCCCCGTG GGCATGCTGG CCATGCTGGG GCTGCTCCTC ATGCATCTCT TCCGCTCGAG CCGGCTCGTC GATGTGGCGA TTTCGGTGGG GGCGGTCGTG CTGATCTCGC TCGGCCTCTG GGCCCTCTCG CCCCAGTTCA TCGCGATGGG CGCAACCGCG CTGCCGCTCT TCCTCGTGGT GATCGTGGGC GCCTGCCTCT TTGCCGGCGT GCCCATCGCC TTCTGCTTCG GGCTCGGCAC GCTGAGCTAT CTGCTCTTCG CCACCCACAT TCCGACCTAT GTCATGGTCG GGCGCATGGA CGAGGGCATG TCGGGGGTGA TCCTCCTGTC GGTGCCGGTC TTCGTGCTTC TGGGCTGCGT GCTCGATGCC ACCGGCATGG GCAAGGCCAT CGTGGGCTTC CTCTCCTCGC TACTCGGCCA TGTGAAGGCG GGCCTGTCGC ATGTGCTCCT CGTGTCGCTC TTCATCGTGT CGGGGATCTC GGGCTCGAAG GTCTCGGACA TGGCGGCCGT TGCGCCCGCG CTCTTCCCCG AGATGAAGCG CCGCGGCAAC AAGCCGAACG AGATGGTGGC GCAGCTTGCC ACCGGCGCCG CGATGGCCGA CACCGTGCCG CCCTCGATCG TGCTGATCGT GCTCGGATCG GTCGCGGGCA TCTCGATCGC CGCGCTCTTC TCGGCGGGCT TCGTGGTGGC CATCGTGCTC CTCTTGTCGC TGATGGCGCT GGCGCGCTGG CGGGCGCGGC ACGAGAACAT GGAGGGCGTG CGCCGCGCCC GCTTCGGCGA CGTGATCCGC CTGCTGGTCT TCGCCGCCCC CGCGCTGGTG CTGCCCTTCC TGATCCGTGC CGCCGTGGCC GAGGGCGCCG CCACCGCGAC CGAGGTCTCG ACCATCGCCG TGGTCTATTC GCTGGTGATC GGCGGCCTGA TGTATGGCGG CTTCAGCCTC CGCGCGCTCT ACCGGATGCT GGTCGAGACC GCGGCCATGA GCGGGGCGAT CCTCCTCATC CTCGGCACCG CCCTCTCGAT GGCCTGGGCC ATCACCCAGG CGGGCGTGGG CCAGACGCTT GCGGATTTCG CCATCAGCCT GCCGGGCGGG GCGCCCACCT TCCTCGTCCT CTCCATCGCG ATCTTCCTCG TGCTGGGCTG CGTGCTCGAG GGGCTGCCCG CGCTCGTGCT GATGTCGCCG CTCATGTTCC CCATCGCCCA CCAGATGGGG ATCAACGAGG TCCACTACGC CATGGTGATC GTGGTCGCGA TGAACATCGG CCTCATGACC CCGCCCATCG GCATCGGCTT CTACCTCGCC TGCCGCATCG GCAATGTCTC GCCCGACAGC GCGATCCACG CGGTCTGGCC CTATGTCGCG GCCCTCATGG CCGGCCTGAT CGTCATTGCC GCGGTGCCGG CCATCTCCAC GGGCTTCCTC TGA
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Protein sequence | MTTAEEFDVG DLSENESARP GSRFMRPVEA IAALLLVAVI GLLLTGVVSR YLVNLPIIWI EEAASICFIW LAMLGAAISL DRNEHLRLTL FVRMLPRRAE EFVETFAMVI VGTFLVALMR DSFEYAYEEW FITTAALHIP NTYRVAAIPV GMLAMLGLLL MHLFRSSRLV DVAISVGAVV LISLGLWALS PQFIAMGATA LPLFLVVIVG ACLFAGVPIA FCFGLGTLSY LLFATHIPTY VMVGRMDEGM SGVILLSVPV FVLLGCVLDA TGMGKAIVGF LSSLLGHVKA GLSHVLLVSL FIVSGISGSK VSDMAAVAPA LFPEMKRRGN KPNEMVAQLA TGAAMADTVP PSIVLIVLGS VAGISIAALF SAGFVVAIVL LLSLMALARW RARHENMEGV RRARFGDVIR LLVFAAPALV LPFLIRAAVA EGAATATEVS TIAVVYSLVI GGLMYGGFSL RALYRMLVET AAMSGAILLI LGTALSMAWA ITQAGVGQTL ADFAISLPGG APTFLVLSIA IFLVLGCVLE GLPALVLMSP LMFPIAHQMG INEVHYAMVI VVAMNIGLMT PPIGIGFYLA CRIGNVSPDS AIHAVWPYVA ALMAGLIVIA AVPAISTGFL
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