| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_3047 |
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| Symbol | |
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| ID | 4899161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009050 |
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| Strand | + |
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| Start bp | 56506 |
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| End bp | 59142 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640113649 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001044919 |
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| Protein GI | 126463806 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0864607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.185142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCGC ATCCGCCCGC AGTCCTCGCC CATCGCCTGT CGGAAGGCCA GCGCCTCGCC
ACGCCGCTCA TGCGGGCCCT GATGAGGGCG ACCGGCACCC AAGTGGACGC GGCCATCGCC
CGCACCATCG CGGAACTCGG CGCTCACTGT GGCGCCGACC GGACGCGGGT CTACCGGATC
GAGGCCGGGC AGGTGCTGGA CTGCACACAC GAATGGTGCA GGTCGGGGAT CTCGGAGATC
CGGCCGGAGA TGCAGCGCAT TCCGCTCGGC ACGCTCGATC GCTGGATGCC GATCCTGCGC
CGCGGCGAAC CGGTCGATGT GCCCGATCTG CACGGCCTGC CCGAGGACGA TCCGGCGAAG
CAGCAGATGG CCCGGCACGG GATCCGGGCG CTTGTCCTGA TGCCCCTGAC CGATGGCACG
GCGCTGACCG GCGTGGTGGG CCTCAGCCTC TTCAGGGCCC GTCGCCCCGT CGATCCGGCG
GAGATGGCCC TCCTGCACTC CATCGCCGAG GCGATGGGTG CCGCCCTCGC ACGGCGGGAT
GCCGAGCGCC GCGCCGTGGC GGCCCGCAGT GCCGCCCGCG ATGTGGCGCG CAACCTCGAA
CGGCTGGCGC GCGTGACCGA GCTGATGACG AACCTTGTCA TCGTCACCGA CGTCGAGCAG
CAGATCGTCT GGGTGAACCG GGCCTTCGAA CGCCAGACGG GTCACAGCCT CGAGGCGATC
CGGGGCCGGA ACTTTGCCGA GGTGGTGCGC GGCCCCGGAA CGGATCCCGG CGTCTGCGCC
GCCGTCGCCG AGGCGATCCG CACCTGTTCG AGCTGCGAGG GCGAGACGAT CAACTACACG
GCCGCGGGCC AGCCCTACTG GATCCGCTTC AACGCCCATC CGCTGTCCGA CGCGGACGGG
CGCTACGTCG GTCATGCGTC GGTCGAGACG GTCATCACCG ACCGCAAGGT GCTCGAGCGC
GAGCTGGCCA CCCGCAACGC CTTTCTGACC GCCGTTCTGC AGACCAGCGT CTCGGCCATC
GTGGCCCTGA ATGCAGAGGG CGGCATCGTC TATGCCAACG ACGAGGCCCG GCGGCTCCTC
GTGCTGCAGC CCCATCGCGG CGGTCTCCGG ATGGAGGCGG TCCTCGAGAC GCTCGACGGC
CGTCCGCTGC CCGAGGCCGA CATGCCCTCG GCCCTCGTGC GCGCCACCGG CGCGCCGCTG
CACGACCTGC GCTATGCGAT CCGCCGCCCC GATGGCCAGT TCGGCATCCT GTCGATCAAT
GCAGCCCCCC TGCCGCAGGC CGCCGACGAC GCGCGGATCG TGATCTCCGT CACCGACATC
ACCCATGCCG AGGCCTCGGC CGAGCGGCTG CGGCGGCAGG CGGCGGAGGA CCCGCTGACC
GGGCTCGCGA ACCGGCGCGC GCTCGCCGAT GCCGTCGAGA CCCGGCTGAC GGAGGCCGCT
CCCTTCGCGC TGGTGATGCT CGACCTCGAC AATTTCAAGG CGGTGAACGA CCTGCAGCGC
CACGACACCG GGGATGCGGT GCTGCGCATC GCGGCCGACC GGCTGCGGGC CGTGGCGGGG
GCCGACTGTC TCGTGGCGCG GATGGGCGGC GACGAATTCA TGGTGCTGGC GCCCGGCACC
GACGCCGCCA GTGCCCCGCG TCTGGCCGAG GCGCTGCGGG CCGCCATCTC GGCCCCGATC
GAGGTCGGCC GCCAGCCGGT GCATCTGGCA GCCTCCGCCG GCATCGCGCT CCATCCCGAT
CACGGGACCT CGATGGCGCT TCTGATGACA GGGGCGGACA TCGCGCTGCA TGCCGCCAAA
CGCGCGGGGC GCAACCGCAG CGTCCTGCTC TCGCAGGCGC AATTCGCCGC CGAAGCCCGG
CGCAGCGCCA TCACTCAGGC GCTGGCGGCC GACGTCGAGG CCGACCTGCG CCTCGTGTTT
CAACCGCAGT TCAGGGCCTG CGGCGCCTTC GACGGGGCCG AGGCGCTCCT GCGCTGGACC
GATCCCCGGC TGGGCGAGAT CGGACCCGCG GAGTTCATTC CCATCGCCGA GGAAGCGGGC
CTCATCCAGC GCATCGACGC GCATGTGGCG GTGCTGGCCG CGCGGCAGCT CGGCCTCTGG
GCGCGGCGTG GCTGGCGCCA CCGGCTCGCG GTCAATGCCT CGGCCCAGAC CTTCGCCCGC
GCGGGCTTTG CCGAGGAGCT GCTGCAGCAC CTCGCGGAGG AGGATGTCTG CCCGCAGCAG
CTCGTGGTCG AACTGACCGA GACGTCGCTC GCCACGCTCT CCTCGGTCGC GGACCACAAT
ATCGCCACCC TGCGGCGCGC CGGCGTGGGC ATCGCCATCG ACGATTTTGG CACGGGCTAC
GCCTCGCTCT CCTATCTGCA TCGGATCGAG GCGACCGAGA TCAAGATCGA CCGCGGCTTC
GTGGCGGGCC TCGAGACGGC GGAGCGGCGC GACAGCAAGC CCCTGATTCA GGCGATCCTC
AGCCTCGCGC ATGCCCTGGG CCTTGCCGTG ACCGCCGAAG GCGTCGAGAC CGAGCGGCAG
CGGAGCTGGC TCTCGGCGGA GGGCTGCGAC CGGCTGCAGG GCTATCTGCT GGGTCGCCCC
CTACCCGTCG AGGCCTTCGA GGCGGCCTTC GTGACGCCAG CCGCGGTTCC GGGCTGA
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| Protein sequence | MIPHPPAVLA HRLSEGQRLA TPLMRALMRA TGTQVDAAIA RTIAELGAHC GADRTRVYRI
EAGQVLDCTH EWCRSGISEI RPEMQRIPLG TLDRWMPILR RGEPVDVPDL HGLPEDDPAK
QQMARHGIRA LVLMPLTDGT ALTGVVGLSL FRARRPVDPA EMALLHSIAE AMGAALARRD
AERRAVAARS AARDVARNLE RLARVTELMT NLVIVTDVEQ QIVWVNRAFE RQTGHSLEAI
RGRNFAEVVR GPGTDPGVCA AVAEAIRTCS SCEGETINYT AAGQPYWIRF NAHPLSDADG
RYVGHASVET VITDRKVLER ELATRNAFLT AVLQTSVSAI VALNAEGGIV YANDEARRLL
VLQPHRGGLR MEAVLETLDG RPLPEADMPS ALVRATGAPL HDLRYAIRRP DGQFGILSIN
AAPLPQAADD ARIVISVTDI THAEASAERL RRQAAEDPLT GLANRRALAD AVETRLTEAA
PFALVMLDLD NFKAVNDLQR HDTGDAVLRI AADRLRAVAG ADCLVARMGG DEFMVLAPGT
DAASAPRLAE ALRAAISAPI EVGRQPVHLA ASAGIALHPD HGTSMALLMT GADIALHAAK
RAGRNRSVLL SQAQFAAEAR RSAITQALAA DVEADLRLVF QPQFRACGAF DGAEALLRWT
DPRLGEIGPA EFIPIAEEAG LIQRIDAHVA VLAARQLGLW ARRGWRHRLA VNASAQTFAR
AGFAEELLQH LAEEDVCPQQ LVVELTETSL ATLSSVADHN IATLRRAGVG IAIDDFGTGY
ASLSYLHRIE ATEIKIDRGF VAGLETAERR DSKPLIQAIL SLAHALGLAV TAEGVETERQ
RSWLSAEGCD RLQGYLLGRP LPVEAFEAAF VTPAAVPG
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