| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1914 |
|---|
| Symbol | |
|---|
| ID | 4897196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | - |
|---|
| Start bp | 2027108 |
|---|
| End bp | 2028664 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640112508 |
|---|
| Product | phytoene dehydrogenase-related protein |
|---|
| Protein accession | YP_001043790 |
|---|
| Protein GI | 126462676 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.603026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTCGA TCTCGCCCGC CTCCGACGCC GACCGCGCCC TTGTGATCGG CTCCGGACTG
GGGGGCCTTG CGGCTGCGAT GCGCCTCGGC GCCAAGGGCT GGCGCGTGAC GGTCATCGAC
AAGCTCGACG TTCCGGGCGG CCGCGGCTCC TCGATCACGC AGGAGGGGCA CCGGTTCGAT
CTCGGACCCA CCATCGTGAC GGTGCCGCAG AGCCTGCGCG ACCTGTGGAA GACCTGCGGG
CGGGACTTCG ACGCCGATGT CGAGCTGAAG CCGATCGATC CGTTTTACGA GGTGCGCTGG
CCGGACGGGT CGCACTTCAC GGTGCGCCAG TCGACCGAGG CGATGAAGGC CGAGGTCGCG
CGCCTCTCGC CCGGCGATGT GGCGGGATAC GAGAAGTTCC TGAAGGACAG CGAGAAGCGC
TACTGGTTCG GCTACGAGGA TCTCGGCCGC CGCTCGATGC ACAAGCTGTG GGATCTCATC
AAGGTGCTGC CCACCTTCGG GATGATGCGG GCCGACCGGT CGGTCTACCA GCACGCCGCG
CTTCGGGTGA AGGACGAGCG GCTGCGCATG GCACTCTCGT TCCACCCGCT CTTCATCGGC
GGCGACCCCT TCAACGTGAC CTCGATGTAT ATCCTCGTGA GCCAGCTCGA GAAGGAGTTC
GGCGTCCATT ATGCCATCGG CGGCGTGGCG GCCATCGCCG CGGCCATGGC GAAGGTGATC
GAGGGGCAGG GCGGCAGCTT CCGCATGAAC ACCGAGGTGG ACGAGATCCT CGTCGAGAAG
GGCACCGCCA CCGGTGTGCG GCTCGCCTCG GGCGAGGTGC TGCGGGCGGG TCTCGTGGTC
TCGAATGCCG ACGCGGGCCA TACCTACATG CGGCTTCTGC GCAACCATCC GCGCCGCCGC
TGGACCGACG CCCATGTGAA GAGCCGGCGC TGGTCGATGG GGCTGTTCGT GTGGTATTTC
GGAACGAAGG GGACGAAGGG CATGTGGCCC GACGTCGGCC ACCACACGAT CGTCAATGCG
CCGCGCTACA AGGGGCTGGT CGAGGACATC TTCCTCAAGG GCAAGCTCGC GAAGGACATG
AGCCTCTATA TCCACCGGCC CTCGATCACC GATCCGACCG TGGCGCCCGA GGGGGATGAC
ACGTTCTATG CGCTCTCGCC CGTGCCGCAT CTGAAACAGG CGCAACCGGT GGACTGGCAG
GCTGTGGCCG AGCCCTACCG CGAAAGCGTG CTCGAGGTGC TCGAACAGTC GATGCCGGGG
ATCGGGGAAC GGATCGGGCC CTCGCTCGTC TTCACCCCCG AGACCTTCCG CGACCGCTAC
CTCAGCCCCT GGGGGGCGGG CTTCTCGATC GAGCCGCGGA TCCTGCAGTC GGCCTGGTTC
CGGCCGCACA ACATTTCCGA GGAGGTGGCG AACCTGTTCC TCGTGGGCGC GGGCACCCAT
CCGGGTGCGG GCGTGCCCGG CGTGATCGGT TCGGCCGAAG TGATGGCCAA GCTTGCCCCC
GACGCGCCGC GTGCGCGGCG GGAGGCCGAA CCCGCTGAAA GGCTTGCCGC GGAATGA
|
|---|
| Protein sequence | MPSISPASDA DRALVIGSGL GGLAAAMRLG AKGWRVTVID KLDVPGGRGS SITQEGHRFD
LGPTIVTVPQ SLRDLWKTCG RDFDADVELK PIDPFYEVRW PDGSHFTVRQ STEAMKAEVA
RLSPGDVAGY EKFLKDSEKR YWFGYEDLGR RSMHKLWDLI KVLPTFGMMR ADRSVYQHAA
LRVKDERLRM ALSFHPLFIG GDPFNVTSMY ILVSQLEKEF GVHYAIGGVA AIAAAMAKVI
EGQGGSFRMN TEVDEILVEK GTATGVRLAS GEVLRAGLVV SNADAGHTYM RLLRNHPRRR
WTDAHVKSRR WSMGLFVWYF GTKGTKGMWP DVGHHTIVNA PRYKGLVEDI FLKGKLAKDM
SLYIHRPSIT DPTVAPEGDD TFYALSPVPH LKQAQPVDWQ AVAEPYRESV LEVLEQSMPG
IGERIGPSLV FTPETFRDRY LSPWGAGFSI EPRILQSAWF RPHNISEEVA NLFLVGAGTH
PGAGVPGVIG SAEVMAKLAP DAPRARREAE PAERLAAE
|
|---|
| |