| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_1897 |
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| Symbol | |
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| ID | 4898064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodobacter sphaeroides ATCC 17029 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009049 |
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| Strand | - |
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| Start bp | 2010641 |
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| End bp | 2012587 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640112491 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001043773 |
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| Protein GI | 126462659 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00653181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.596808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAATC CCACCCCGCG ACCCGAAACC CCGCTTTTGG ATCGCGTCTG CTGCCCGGCC
GACATGAAGG CGCTGAGTGA CGCCGAACTG GAGCGGCTGG CCGACGAAGT GCGTTCCGAG
GTGATTTCGG TCGTTGCCGA GACGGGAGGA CATCTGGGGT CCTCGCTGGG GGTGGTCGAG
CTGACCGTCG CGCTGCATGC GGTCTTCAAC ACGCCCACCG ACAAGCTCGT CTGGGACGTG
GGCCACCAGT GCTACCCCCA CAAGATCCTC ACGGGCCGGC GCGAGCAGAT GCGCACCCTG
CGCCAGAAGG GCGGCCTCTC GGGCTTCACC AAGCGCTCGG AATCCGCCTA CGACCCGTTC
GGCGCGGCCC ATTCCTCGAC CTCGATCTCG GCGGCGCTCG GCTTTGCCAT GGGCCGCGAG
CTGGGCCAGC CCGTGGGCGA CACGATCGCC GTGATCGGCG ACGGCTCGAT CACCGCGGGC
ATGGCCTACG AGGCGCTGAA CCACGCGGGC CATCTGAACA AGCGCCTGTT CGTGATCCTG
AACGACAATG ACATGAGCAT CGCGCCGCCC GTGGGGGCTC TGGCGCGCTA TCTCGTGAAT
CTCTCCTCGA AGGCGCCCTT CGCCACGCTG CGCGCGGCCG CCGACGGGCT CGAGGCCTCG
CTGCCGGGGC CGCTCCGCGA CGGGGCGCGC CGGGCGCGCC AGCTCGTGAC CGGGATGCCG
GGCGGGGGCA CGCTCTTCGA GGAGCTGGGC TTCACCTATG TGGGCCCCAT CGACGGCCAC
GACATGGAGG CGCTGCTCCA GACGCTGCGC GCGGCGCGGG CCCGGACCAC GGGGCCGGTG
CTCATCCATG TGGTCACGAA GAAGGGCAAG GGTTACGCCC CCGCCGAGAA TGCCCCCGAC
AAGTATCACG GGGTGAACAA GTTCGACCCC GTCACGGGCG AGCAGAAGAA GTCGGTGGCC
AACGCGCCGA ACTACACCAA GGTCTTCGGC TCCACCCTGA CCGAGGAGGC CGCGCGCGAT
CCGCGCATCG TGGCCATCAC CGCCGCCATG CCCTCGGGCA CCGGCGTCGA CATCATGCAG
AAGCGTTTCC CGAACCGCGT CTTCGACGTG GGCATCGCCG AGCAGCATGC CGTGACCTTC
GCGGCGGGCC TCGCCGGGGC CGGGATGAAG CCCTTCTGCG CGATCTATTC CTCGTTCCTG
CAACGGGGCT ATGACCAGAT CGCCCATGAC GTGGCGCTGC AGAACCTTCC CGTCCGCTTC
GTGATCGACC GGGCGGGGCT CGTGGGGGCC GATGGCGCGA CCCATGCGGG GGCCTTCGAT
GTGGGCTTCC TCACGTCGCT GCCCAACATG ACCGTGATGG CCGCGGCCGA CGAGGCCGAG
CTCATCCACA TGATCGCCAC CGCCGTGGCC TTCGACGAGG GCCCCATCGC CTTCCGCTTC
CCGCGGGGCG AAGGGGTGGG GGTCGAGATG CCCGAGCGCG GGACCGTGCT GGAACCCGGC
CGGGGCCGCG TGGTGCGCGA GGGGACGGAT GTGGCGATCC TTTCCTTCGG CGCGCATCTG
CACGAGGCCT TGCAGGCGGC GAAACTTCTC GAGGCCGAGG GGGTGAGCGT GACCGTGGCC
GACGCCCGCT TCTCGCGCCC GCTCGACACC GGGCTCATCG ACCAGCTCGT GCGCCATCAC
GCCGCGCTGG TGACGGTGGA GCAGGGGGCC ATGGGCGGCT TCGGCGCCCA TGTCATGCAC
TATCTCGCCA ATTCGGGCGG CTTCGACGGG GGCCTCGCGC TCCGGGTCAT GACGCTGCCC
GACCGCTTCA TCGAGCAGGC GAGCCCCGAG GACATGTATG CCGATGCGGG GCTGCGGGCC
GAGGACATCG CGGCCACCGC GCGGGGCGCG CTCGCCCGGG GGCGCGTGAT GCCGCTCCGG
CAGACGGCAA AGCCGCGGGC GGTCTGA
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| Protein sequence | MTNPTPRPET PLLDRVCCPA DMKALSDAEL ERLADEVRSE VISVVAETGG HLGSSLGVVE
LTVALHAVFN TPTDKLVWDV GHQCYPHKIL TGRREQMRTL RQKGGLSGFT KRSESAYDPF
GAAHSSTSIS AALGFAMGRE LGQPVGDTIA VIGDGSITAG MAYEALNHAG HLNKRLFVIL
NDNDMSIAPP VGALARYLVN LSSKAPFATL RAAADGLEAS LPGPLRDGAR RARQLVTGMP
GGGTLFEELG FTYVGPIDGH DMEALLQTLR AARARTTGPV LIHVVTKKGK GYAPAENAPD
KYHGVNKFDP VTGEQKKSVA NAPNYTKVFG STLTEEAARD PRIVAITAAM PSGTGVDIMQ
KRFPNRVFDV GIAEQHAVTF AAGLAGAGMK PFCAIYSSFL QRGYDQIAHD VALQNLPVRF
VIDRAGLVGA DGATHAGAFD VGFLTSLPNM TVMAAADEAE LIHMIATAVA FDEGPIAFRF
PRGEGVGVEM PERGTVLEPG RGRVVREGTD VAILSFGAHL HEALQAAKLL EAEGVSVTVA
DARFSRPLDT GLIDQLVRHH AALVTVEQGA MGGFGAHVMH YLANSGGFDG GLALRVMTLP
DRFIEQASPE DMYADAGLRA EDIAATARGA LARGRVMPLR QTAKPRAV
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