| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17029_0870 |
|---|
| Symbol | |
|---|
| ID | 4896994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17029 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009049 |
|---|
| Strand | + |
|---|
| Start bp | 890078 |
|---|
| End bp | 892948 |
|---|
| Gene Length | 2871 bp |
|---|
| Protein Length | 956 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640111455 |
|---|
| Product | glycine dehydrogenase |
|---|
| Protein accession | YP_001042753 |
|---|
| Protein GI | 126461639 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
|---|
| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.597554 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.602316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTCA CCCCCACGGA CTATAACGCC TACGATTTCG CCAACCGCCG GCACATCGGC
CCGTCGCCCT CCGAAATGGA GGAGATGCTG CGCGTGGTGG GGGTGTCCTC GCTCGACCAG
CTGATCGAGG AGACGGTGCC CGCCTCGATC CGGCAGGAGA CGCCGCTCGA CTGGGCGCCG
CTCGCCGAGC ATGAGCTGCT GGCCCGGATG CGCGAGGTGG CCGGCAAGAA CCGCGTGATG
ACCTCGCTCA TCGGGCAGGG CTATTACGGC ACGGTGACGC CGCCCGCCAT CCAGCGCAAC
ATCCTCGAGA ATCCGGCCTG GTATACGGCC TATACGCCCT ACCAGCCCGA GATCGCGCAG
GGGCGGCTCG AGGCGCTCTT GAACTACCAG ACCATGGTCG CGGACCTCAC CGGCCTGCCG
GTCGCCAACG CCTCGCTTCT CGACGAGGCG ACGGCGGCGG CCGAGGCCAT GACCATGGCC
GAGCGCGCCT CGAAGTCGAA GGCGCGGGCC TTCTTCGTCG ATGCCGACTG CCATCCGCAG
ACGATCTCGG TCATCCGCAC CCGCGCCGAG CCGCTGGGCA TCGAGGTGAT CGTGGGCCAT
CCCGCGCAGC TCGTGCCCGA GGATGTGTTC GGCGCGCTGT TCCAGTATCC CGGCACCTAC
GGGCTCGTGC GCGACTTCAC CCGCGACATT GCCGCGCTGC ACGAGGCGAA GGCGCTCGCC
GTGGTGGCGA CCGACCTTCT GGCGCTCTGC CTCCTCAAGG AGCCGGGCGC GATGGGCGCC
GACATCGCCA TCGGCTCGAG CCAGCGGTTC GGCGTGCCGA TGGGCTACGG CGGCCCGCAT
GCGGCCTTCA TGTCCTGCAA GGACGATCTG AAGCGCTCGA TGCCCGGCCG GCTCGTCGGC
GTTTCGGTCG ATGCGCGCGG CAACAAGGCC TACCGCCTCG CCCTCCAGAC CCGCGAGCAG
CATATCCGCC GCGAGAAGGC CACCTCGAAC GTCTGCACCG CGCAGGCGCT TCTGGCGGTC
ATGGCGAGCT TCTATGCCGT CTTCCACGGC CCCCGCGGCC TCCGCGCCAT CGCCGAGCGG
GTGCATCTGA ACACCGTCCG CCTCGCGACC GCGCTGAAGG AGGCCGGGGC CCGCGTCAGC
CCCGAGGCCT TCTTCGACAC GATCACCGTC GAGGTGGGCG TGGGGCAGGC GGGGATCCTC
GCCGCCGCGC GCCACCGGGG CATCAACCTG CGCAAGGTGG GCCGCGACCG GGTGGGGATC
TCGCTCGACG AGACGACCGA TGCCGGCGTG ATCGCGCGCG TGCTCGATGC CTTCGGGATC
CACGAGCCCG CGCCCGCGAA AGTGGGCCTC GGCTTCCCCG AGCCGCTCCT GCGCGAGACC
GGCTATCTCT CACATCCGGT CTTCCAGATG AACCGGGCGG AATCCGAGAT GATGCGCTAC
ATGCGCCGCC TTTCGGACCG TGACCTCGCG CTGGACCGGG CGATGATCCC GCTCGGATCC
TGCACGATGA AGCTGAATGC CGCCGCCGAG ATGATGCCCA TCACCTGGCC CGAATTCGGC
ACGCTGCATC CGTTCGCGCC GGCCGATCAG GCCGCGGGCT ATCACGAGGC CATCGGCGAT
CTGGCCCAGC GGCTCTGCCG GATCACCGGC TACGACGCCA TGTCGATGCA GCCGAACTCG
GGCGCGCAGG GCGAATATGC GGGGCTTCTG ACCATCCTCG CCTATCACCG GGCGCGGGGC
GAAGCGGAGC GCACGATCTG CCTCATCCCG GTCTCGGCGC ATGGCACCAA CCCGGCCTCG
GCGCAGATGG CGGGGATGAA GGTGGTCGTG GTGAAGTCGG CGCCGAACGG CGACGTCGAT
CTCGAGGATT TTCGCGACAA GGCGGCGGCG GCGGGCGACC GGCTCGCGGC CTGCATGATC
ACCTATCCCT CGACCCACGG CGTCTTCGAG GAGACGGTGC GCGAGGTCTG CCGCATCACC
CACGAGCACG GCGGTCAGGT CTATATCGAC GGGGCCAACA TGAACGCGAT GGTGGGCCTC
GTGCAGCCGG GCGCCATCGG CGGCGACGTG AGCCACCTCA ACCTGCACAA GACCTTCGCC
ATTCCGCATG GCGGCGGCGG CCCCGGCATG GGGCCCATCG GGGTCAAGGC GCATCTGGCG
CCCTACCTGC CGGGCCATCC CGAGGTGACG GGGCCGCTGA CCGGCGGCCA TGACGAGGCG
GCCGACGAGG GGCCGGTCTC GGCCGCGCCC TATGGCTCGG CCTCGATCCT GCTCATCTCC
TGGGCCTATT GCCTGATGAT GGGCGGCGAG GGGCTCACGC AGGCGACGCG GGTCGCGATC
CTGAACGCAA ACTATATCGC GGCGCGGTTG CGCGGGGCCT ACAAGGTGCT GTTCATGGGC
AATCGCGGGC GCGTGGCCCA CGAATGCATC CTCGACACCC GGCCCTTCGC CGAGGCGGGC
GTGACGGTGG ACGATATCGC CAAGCGGCTG ATCGACAACG GCTTCCACGC GCCGACCATG
AGCTGGCCCG TGCCGGGGAC CCTGATGGTC GAGCCCACGG AATCCGAGAC CAAGGCCGAG
ATCGACCGGT TCGTGGCGGC GCTCCTTGCG ATCCGCGAGG AGATCCGCGC GGTCGAGGAG
GGCGAAATCG CCGCCGGGGA CAGCCCGCTG CGCCATGCGC CGCATACGGT CGAGGATCTG
GTGGCGGACT GGGACCGCAA ATATCCGCGC GAGCAAGGCT GCTTCCCGCC GGGCTCGTTC
CGGGTCGACA AATACTGGCC GCCCGTCGGC CGGGTCGACA ATGCGTGGGG CGACCGCAAC
CTCGTCTGCA CCTGTCCGCC GGTGGAAAGC TACAGCATCG CCGCGCAGTA G
|
|---|
| Protein sequence | MSFTPTDYNA YDFANRRHIG PSPSEMEEML RVVGVSSLDQ LIEETVPASI RQETPLDWAP
LAEHELLARM REVAGKNRVM TSLIGQGYYG TVTPPAIQRN ILENPAWYTA YTPYQPEIAQ
GRLEALLNYQ TMVADLTGLP VANASLLDEA TAAAEAMTMA ERASKSKARA FFVDADCHPQ
TISVIRTRAE PLGIEVIVGH PAQLVPEDVF GALFQYPGTY GLVRDFTRDI AALHEAKALA
VVATDLLALC LLKEPGAMGA DIAIGSSQRF GVPMGYGGPH AAFMSCKDDL KRSMPGRLVG
VSVDARGNKA YRLALQTREQ HIRREKATSN VCTAQALLAV MASFYAVFHG PRGLRAIAER
VHLNTVRLAT ALKEAGARVS PEAFFDTITV EVGVGQAGIL AAARHRGINL RKVGRDRVGI
SLDETTDAGV IARVLDAFGI HEPAPAKVGL GFPEPLLRET GYLSHPVFQM NRAESEMMRY
MRRLSDRDLA LDRAMIPLGS CTMKLNAAAE MMPITWPEFG TLHPFAPADQ AAGYHEAIGD
LAQRLCRITG YDAMSMQPNS GAQGEYAGLL TILAYHRARG EAERTICLIP VSAHGTNPAS
AQMAGMKVVV VKSAPNGDVD LEDFRDKAAA AGDRLAACMI TYPSTHGVFE ETVREVCRIT
HEHGGQVYID GANMNAMVGL VQPGAIGGDV SHLNLHKTFA IPHGGGGPGM GPIGVKAHLA
PYLPGHPEVT GPLTGGHDEA ADEGPVSAAP YGSASILLIS WAYCLMMGGE GLTQATRVAI
LNANYIAARL RGAYKVLFMG NRGRVAHECI LDTRPFAEAG VTVDDIAKRL IDNGFHAPTM
SWPVPGTLMV EPTESETKAE IDRFVAALLA IREEIRAVEE GEIAAGDSPL RHAPHTVEDL
VADWDRKYPR EQGCFPPGSF RVDKYWPPVG RVDNAWGDRN LVCTCPPVES YSIAAQ
|
|---|
| |