Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_0353 |
Symbol | rpoB |
ID | 4897688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009049 |
Strand | + |
Start bp | 371221 |
End bp | 375354 |
Gene Length | 4134 bp |
Protein Length | 1377 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640110937 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001042241 |
Protein GI | 126461127 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCAGA GCTACGTTGG CCAGAAACGT ATCCGCAGGT ACTACGGCAA GATCCGCGAA GTGCTGGAGA TGCCGAACCT GATCGAGGTT CAGAAATCCT CCTACGATCT GTTCCTGAAG TCGGGCGACG GCCCGAAGGC GGCCGATGGC GAAGGCATCC AGGGCGTCTT CCAGTCGGTC TTCCCGATCA AGGACTTCAA CGAGACCGCC GTGCTCGAGT TCGTGAAATA CGAGCTCGAA AAGCCGAAAT ATGACGTGGA CGAGTGCCAG CAGCGCGACA TGACCTATGC CGCGCCGCTG AAGGTGACGC TGCGCCTGAT CGTGTTCGAT GTCGACGAGA CCACGGGCGC CCGCTCGGTC AAGGACATCA AGGAGCAGGA CGTCTACATG GGCGACATGC CCCTGATGAC CGCCAACGGC ACGTTCATCG TGAACGGCAC CGAGCGCGTG ATCGTCAGCC AGATGCACCG CAGCCCCGGC GTGTTCTTCG ACCACGACAA GGGCAAGACC CACTCCTCGG GCAAGCTCCT GTTCGCCTGC CGCATCATCC CCTACCGCGG CTCGTGGCTG GACTTCGAAT TCGACGCGAA GGACATCGTC TTCGCGCGCA TCGACCGTCG CCGGAAGCTG CCGGTGACGA CGCTGCTCTA TGCCCTCGGC ATGGATCAGG AAGGCATCAT GGATGCCTAT TACGAAACCG TGAACTTCAA GCATCAGAAG AACCGCGGCT GGGTCACCCG GTTCTTCCCC GAGCGCGTGC GCGGCACCCG TCCCACCTAC GATCTCGTGG ATGCGGCCAC CGGCGAGGTC ATCCTGAAGG CGGGCGAGAA GGCCACGCCG CGGATGGTCA AGAAGTGGAT CGACGAGGCT CAGATCACCG AGCTTCTGGT GCCGTTCGAC CATATCGTCG GCCGCTATGT CGCGCAGGAC ATCATCAACG AGGAAACCGG CGAGATCTGG GTCGAAGCCG GTGACGAACT CACGATGGAG TACGACCGCG ACGGCGAGGT GAAGGGCGGC ACGCTGAAGC TGCTGCTCGA TCAGGGCATC ACCGACATCC CGGTGCTCGA CATCGACAAT GTCAACGTCG GCCCCTACAT CCGCAACACG ATGGCGGCGG ACAAGAACAT GGGCCGCGAC ACCGCGCTCA TGGACATCTA CCGCGTCATG CGTCCGGGTG AGCCGCCGAC CGTCGAGGCG GCGTCGAACC TGTTCGACAC GCTGTTCTTC GACAGCGAGC GCTATGACCT CTCGGCCGTC GGCCGCGTGA AGATGAACAT GCGTCTCGAC CTCGGCAAGC CCGACACCCA GCGCACGCTC GACCGCGACG ACATCATCGC CTGCATCAAG GCGCTGACCG AGCTGCGCGA CGGCAAGGGC GAGATCGACG ACATCGACCA CCTCGGCAAC CGCCGGGTGC GCTCGGTGGG CGAGCTCATG GAGAACCAGT ACCGCGTCGG TCTCCTGCGC ATGGAGCGCG CGATCAAGGA ACGCATGTCC TCGGTCGAGA TCGACACGAT CATGCCGCAG GATCTGATCA ACGCGAAGCC CGCGGCGGCC GCGGTGCGCG AGTTCTTCGG CTCGTCGCAG CTCTCGCAGT TCATGGACCA GACCAACCCG CTGTCGGAAG TCACCCACAA GCGGCGTCTC TCGGCCCTCG GGCCGGGCGG TCTGACCCGC GAGCGCGCGG GCTTCGAGGT GCGCGACGTT CACCCGACCC ACTATGGCCG GATGTGCCCG ATCGAGACGC CGGAAGGTCA GAACATCGGC CTCATCAACT CGCTCGCGAC CTTCGCCCGC GTGAACAAGT ACGGCTTCAT CGAGACCCCC TATCGCAAGG TGGTCGAGGG CGCCGTGACC GACGACGTGG TCTACATGTC GGCCACCGAG GAGATGCGGC ACACCGTGGC GCAGGCCAAC GCGCAGCTCG ATGAGGAGGG CCGGTTCGTC TCCGACCTGA TCTCGTCGCG CAAGGCGGGC GAGTTCATGC TGAACCCGCC GGATGCCATC GACCTGATCG ACGTGTCGCC GAAGCAGCTC GTCTCGGTTG CGGCCTCGCT GATCCCGTTC CTCGAGAACG ACGACGCGAA CCGCGCGCTG ATGGGCTCGA ACATGCAGCG TCAGGCGGTG CCGCTCCTGC AATCCGACGC GCCCTTCGTG GGCACGGGGA TCGAGGCCGT GGTGGCGCGT GACTCCGGGG CCGCCATCAT GGCGCGGCGC GCCGGCGTGA TCGATCAGGT GGATGCGACG CGTATCGTCG TGCGCGCCAC CGAGATGCTG GAGCCGGGCG AGCCGGGCGT CGACATCTAC CGTCTGCGCA AGTTCAAGCG CTCGAACCAG TCGTCCTGCA TCAACCAGCG CCCGCTGGTG AAGGTGGGTG ACGTGGTGCA CCGTGGCGAG GTGGTGGCCG ACGGCCCCTG CACCGACATG GGCGAGCTGG CCCTCGGCCG GAACGTGATC GTGGCCTTCA TGCCGTGGAA CGGCTACAAC TACGAGGACT CGATCCTGAT CTCCGAGCGG ATCCTCCGCG ACGACGTCTA TACCTCGATC CATATCGAGG AATACGAGGT CGCGGCGCGG GATACGAAGC TCGGGCCGGA AGAGATCACC CGCGACATCC CGAACGTCGG CGAGGAAGCC CTGCGCAACC TCGACGAGGC CGGTATCGTC TATATCGGCG CCGAAGTGCA GCCGGGCGAC ATCCTCGTGG GCAAGATCAC CCCCAAAGGC GAAAGCCCGA TGACGCCGGA AGAAAAGCTC CTCCGCGCCA TCTTCGGCGA AAAGGCCTCG GACGTGCGCG ACACGTCGCT GCGCCTGCCG CCGGGGGCCT ACGGCACGAT CGTGGAAGTG CGGGTCTTCA ACCGCCACGG CGTCGACAAG GACGAGCGGG CGCTGCAGAT CGAGCGCGAG GAAGTCGAGC GTCTGGCCCG TGACCGGGAC GACGAGCTCG CGATCCTCGA GCGCAACATC TACTCGCGTC TGCGTACGCT GATCATGGGC AAGACCGCGG TGAAGGGGCC GAAGGGCATC CGGGCGGGCT CGGAGATCAA CGAGGACCTG CTGTCCACGC TGTCGCGTGG CCAGTGGTGG CAGCTGGCGC TGGGTGAGGA AGCCGACGCG AAGGAAGTCG AGGCCCTCCA CGAGCAGTTC GAGGCGCAGA AGCGCGCGCT CGATCACCGC TTCGAGGACA AGGTCGAGAA GGTCCGTCGC GGCGACGATC TGCCTCCGGG CGTGATGAAG ATGGTCAAGG TCTTCGTGGC TGTGAAGCGC AAGCTGCAGC CGGGCGACAA GATGGCCGGC CGTCACGGCA ACAAGGGCGT CATCTCCAAG GTCGTGCCGA TCGAGGACAT GCCGTTCCTT GCGGACGGCA CCCATGTCGA CCTTGTGCTC AACCCGCTCG GCGTGCCGTC GCGGATGAAC GTGGGGCAGA TCCTCGAGAC CCACATGGGC TGGGCCGCAC GCGGTCTGGG CATCAAGATC GACGAGGCGC TGCAGGACTA CCGCCGCTCG GGCGACCTCA CGCCGGTGAA GGAGGCCATG CGTCTCGCCT ATGGCGACGA GACCTATGAA GGGGCCTTCG GCGACCGCGA GGACGAGGAT CTGGTCGAAA TGGCCGGCCG CGTCACAAAG GGCGTGCCGA TCGCGACGCC GGTCTTCGAC GGGGCGAAGG AGCCCGACGT CAACGACGCG CTGCGCCGGG CCGGCTTCGA CCAGAGCGGG CAGTCCATCG TCTTCGACGG CCGCACGGGC GAGCAGTTCG CGCGTCCCGT CACCGTGGGC GTGAAGTACA TGCTGAAGCT GCATCACCTC GTGGACGACA AGCTGCACGC GCGGTCGACC GGTCCGTACT CGCTCGTCAC CCAGCAACCG CTGGGCGGCA AGGCGCAGTT CGGTGGCCAG CGTCTGGGCG AGATGGAGGT CTGGGCTCTG GAAGCCTACG GCGCCGCCTA CACCCTGCAG GAGATGCTGA CGGTGAAGTC GGACGACGTG GCGGGCCGCA CGAAGATGTA CGAGTCCATC GTCAAGGGCG AAGACAACTT CGAGGCCGGC GTCCCGGAGT CGTTCAACGT GCTCGTCAAG GAAGTGCGGG GCCTCGGCCT CAACATGGAA CTCCTGGATG CGGACGAGGA ATAA
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Protein sequence | MAQSYVGQKR IRRYYGKIRE VLEMPNLIEV QKSSYDLFLK SGDGPKAADG EGIQGVFQSV FPIKDFNETA VLEFVKYELE KPKYDVDECQ QRDMTYAAPL KVTLRLIVFD VDETTGARSV KDIKEQDVYM GDMPLMTANG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAC RIIPYRGSWL DFEFDAKDIV FARIDRRRKL PVTTLLYALG MDQEGIMDAY YETVNFKHQK NRGWVTRFFP ERVRGTRPTY DLVDAATGEV ILKAGEKATP RMVKKWIDEA QITELLVPFD HIVGRYVAQD IINEETGEIW VEAGDELTME YDRDGEVKGG TLKLLLDQGI TDIPVLDIDN VNVGPYIRNT MAADKNMGRD TALMDIYRVM RPGEPPTVEA ASNLFDTLFF DSERYDLSAV GRVKMNMRLD LGKPDTQRTL DRDDIIACIK ALTELRDGKG EIDDIDHLGN RRVRSVGELM ENQYRVGLLR MERAIKERMS SVEIDTIMPQ DLINAKPAAA AVREFFGSSQ LSQFMDQTNP LSEVTHKRRL SALGPGGLTR ERAGFEVRDV HPTHYGRMCP IETPEGQNIG LINSLATFAR VNKYGFIETP YRKVVEGAVT DDVVYMSATE EMRHTVAQAN AQLDEEGRFV SDLISSRKAG EFMLNPPDAI DLIDVSPKQL VSVAASLIPF LENDDANRAL MGSNMQRQAV PLLQSDAPFV GTGIEAVVAR DSGAAIMARR AGVIDQVDAT RIVVRATEML EPGEPGVDIY RLRKFKRSNQ SSCINQRPLV KVGDVVHRGE VVADGPCTDM GELALGRNVI VAFMPWNGYN YEDSILISER ILRDDVYTSI HIEEYEVAAR DTKLGPEEIT RDIPNVGEEA LRNLDEAGIV YIGAEVQPGD ILVGKITPKG ESPMTPEEKL LRAIFGEKAS DVRDTSLRLP PGAYGTIVEV RVFNRHGVDK DERALQIERE EVERLARDRD DELAILERNI YSRLRTLIMG KTAVKGPKGI RAGSEINEDL LSTLSRGQWW QLALGEEADA KEVEALHEQF EAQKRALDHR FEDKVEKVRR GDDLPPGVMK MVKVFVAVKR KLQPGDKMAG RHGNKGVISK VVPIEDMPFL ADGTHVDLVL NPLGVPSRMN VGQILETHMG WAARGLGIKI DEALQDYRRS GDLTPVKEAM RLAYGDETYE GAFGDREDED LVEMAGRVTK GVPIATPVFD GAKEPDVNDA LRRAGFDQSG QSIVFDGRTG EQFARPVTVG VKYMLKLHHL VDDKLHARST GPYSLVTQQP LGGKAQFGGQ RLGEMEVWAL EAYGAAYTLQ EMLTVKSDDV AGRTKMYESI VKGEDNFEAG VPESFNVLVK EVRGLGLNME LLDADEE
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