Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17025_3017 |
Symbol | |
ID | 5084616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17025 |
Kingdom | Bacteria |
Replicon accession | NC_009428 |
Strand | + |
Start bp | 3083246 |
End bp | 3086629 |
Gene Length | 3384 bp |
Protein Length | 1127 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640484588 |
Product | transglutaminase domain-containing protein |
Protein accession | YP_001169206 |
Protein GI | 146279047 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases [COG4196] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0756013 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.525776 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCCATT GGCAGCCCAC CGCGATCCGT GGAACCGTCA GGCCGACCGG GCAACGGACG AGCGAGATGT CGATCAAGGC CAGCATCCAC CACCTGACCC ATTACCGATA CGACCGGCCG GTGACGCTCG GGCCGCAGGT GATCCGCCTG CGCCCCGCGC CCCATTCCCG CACGCGCGTC ATCTCGCATT CGCTGAAGGT CTCGCCCGGC GGCCATTTCG AGAGCCACCA GCAGGACCCT TACGGCAACT GGCTGACGCG GATCGTCTTT CCCGAGCCGG TGACCGAGTT CCGCATCGAG GTCGATCTGG TCGCCGATAT GGCGGTCTAC AACCCGTTCG ACTTCTTCGT CGAAGAGTCG GCCGAGCACT GGCCCTTCGA TTATCCCGAC GACATCCTCG AGGATCTCTC GATCTACCGC ACGCCCGAAC CGGCGGGGCC GCACCTGCGC GCCCTTCTCG ACACGATCCC GCGCGAGCGG CGGCGGACGG TGGACATGGT CGTCGATCTG AACGCCCGCC TCGCGCGCGA GATCGCCTAT GTGATCCGCA TGGAGCCCGG CGTCTTCAGC CCGGAGGAGA CGCTGGCCCA GGGCCGCGGC TCGTGCCGTG ACAGCACCTG GCTGCAGGTG CAGATCCTGC GCCATCTGGG GTTCGCCGCC CGCTTCGTCT CGGGCTACCT GATCCAGCTG AAGCCCGACC TCGAGGCGCT GGATGGTCCT TCGGGCACCG ATCACGATTT CACCGACCTG CACGCCTGGG CCGAGGTCTA TCTGCCCGGC GCGGGATGGA TCGGGCTCGA CGCGACCTCG GGGCTCCTGA CGGGCGAGAG CCACATCCCG CTGGCCGCGA CCCCGCACTA CCGCAACGCA GCCCCCATTG CCGGCATGGC GAGCTACGCC GAGGTGGATT TCGCCTTCGA CATGACGGTG GCCCGCGTCG CCGAGCATCC GCGGATCACC AAGCCCTTCT CCGAGGACAG CTGGGAGCGT CTGAACGCGC TGGGGCACAG GGTCGATGCG GCGCTGACGG CGGGCGACGT CCGGCTGACG ATGGGGGGCG AGCCCACCTT CGTCTCGATC GACGATTTCG AGGCCGGCGA GTGGAACACC GAGGCCGTGG GTCCCACCAA GCGCGCCTTT GCCGATCGGC TGATCCGGCG GCTGCGGGAC CGGTTTGCGC CGGGTGGCTT CCTGCATTAC GGGCAGGGCA AATGGTATCC GGGCGAGACC CTGCCGCGCT GGACCTTCTC GCTTTACTGG CGCGAGGATG GCCAGCCGAT CTGGCACGAT CCCGCGCTCG TGGCGGCCGA GGCGGCCCCG GCCGACCTTG GCGCGGCCGA GGCCGAGCGT CTCATGCAGG GGATCGCCGC GGAACTGGGG CTCGAGCCTG ATCTCGTGGT GCCCGCTTAC GAGGATCCGG GCGAGTGGCT GCTGAAGGAG GGCAACCTCC CCGAGAACGT GACGCCCGAA AACTCGGAAC TGAAGGACCC CGAAGAGCGG CTGCGCATGG TCCGCGTCTT CGAGCGTGGC CTGACCGAAC CTTCGGGCTT CGTGCTGCCG GTGCAGCGGT GGCAGGCGCA GGCCGCCGGC CGGCGCTGGC GGTCCGAGCG GTGGAAGCTG CGGCGCCGGC ATCTGTTCCT CGTGCCCGGC GACAGCCCGG TGGGCTACCG CCTGCCGCTC GGCTCGCTGC CCCATGTGCC GCCCTCGCGC TATCCCTACA TCAACCCGAC CGATCCCACG GTCGAGCGCG GGCCGCTGCC GCCCCCGGCG CAGACCGTGC CGCTCCAGAC GCCCGAAGCC GCAGTGGCCG CCTTCACCGC TGCGACGCCC GGCCAGACCT TGGTCGAGCA GATCCTCGGC GACGAAGGCG CGGTTCGCAC GGCGCTGGCG GTCGAGGTGC GGGACGGGCG GCTCTGCATC TTCATGCCGC CCGTCGAGGC GGTCGAGGAT TATCTCGATC TCGTGGCTGC GGCCGAGGCG GCGGCGGCCC GGCTGAACCT GCCGGTCCAT GTCGAGGGCT ACGCGCCCCC GCACGACCCC CGGCTGAAGG TGATCCGCGT CGCCCCCGAT CCGGGCGTGA TCGAGGTGAA CATCCATCCG GCCGCGAGCT GGGAGGAGTG CGTCTCGATC ACCACCGCCG TCTACGAGGA GGCGCGCCAG TGCCGCCTCG GCGCCGACAA GTTCATGATC GACGGCCGCC ATTGCGGCAC GGGGGGCGGC AACCATGTGG TGGTGGGGGG GCGGACGCCG ATGGACTCGC CCTTCCTGCG CCGGCCCGAT CTGCTGCGCA GCCTGATCCT GCACTGGAAC CGGCACCCGT CGCTCTCCTG CCTCTTCTCG GGCCTCTTCA TCGGCCCGAC GAGTCAGGCG CCCCGGATCG ACGAGGCCCG CCACGACAGC CTCTACGAGC TTGAGATCGC GCTGGCGCAG ATCCCGGGGC CGCAGGACCC GCGCGCGCCG CTCTGGCTGC CCGACCGGCT CCTGCGCAAC ATCCTGACCG ACGTCACCGG CAACACCCAC CGGGCCGAGA TCTGCATCGA CAAGATGTTC TCGCCCGACG GACCGACGGG CCGCCTCGGT CTGGTGGAGT TCCGCGGCTT CGAGATGCCG CCCGATCCGC GGATGAGCCT CGCCCAGCAG CTTCTGATCC GCGCCCTCAT CGCGCGGATG TGGCAGAGCC CGGTCACCGG CGCCCTGACC CGCTGGGGCA CGGCGCTGCA TGACCGCTTC ATGCTCCAGC ACCATGTCTG GGAGGATTTC CTCGACGTGC TGGCCGACCT TCGGGCCCAC GGCTTCGACC TCGACCCCGA GTGGTTCCGG GCGCAGGCCG AATTCCGCTT CCCCTTCTGC GGCGAGGTGA CCTGCGAAGG CGCGCATCTC GAGATCCGTC AGGCGCTCGA ACCCTGGCAT GTGCTGGGCG AGACCGGCGC CATCGGCGGC ACGGTGCGCT ACACCGACAG CTCGACCGAG CGGTTGCAGG TGACGCTCTC GGGCGCCGAT CCGGCGCGCT ACCGCGTGGC CTGCAACGGG CGCGAGGTGC CGCTGCAGCC CGTGGCCAAC GGCCGGGCGG TGGCGGGGGT GCGGTTCAAG GCCTGGCAGC CGGCGGCGGC GCTGCATCCG AACCTGCCCG TCGATGCGCC GCTGACCTTC GACCTCTACG ACACCTGGTC GGGGCGCGCA CTGGGCGGCT GCGTCTATCA CGTCGCCCAT CCCGGCGGGC GCAACTACGA GACCTTCCCC GTGAACGGCA ACGAGGCGGA GGCGCGCCGC CTGGCCCGCT TCACGCCCCA CGGCCACAGC GCCGGGCACT GGCCCCTTCG GCCCGAGCGT CCGCACCCCG AGTTTCCGAT GACGCTCGAC CTGCGCCGGC CTGCGGGGCT CTGA
|
Protein sequence | MAHWQPTAIR GTVRPTGQRT SEMSIKASIH HLTHYRYDRP VTLGPQVIRL RPAPHSRTRV ISHSLKVSPG GHFESHQQDP YGNWLTRIVF PEPVTEFRIE VDLVADMAVY NPFDFFVEES AEHWPFDYPD DILEDLSIYR TPEPAGPHLR ALLDTIPRER RRTVDMVVDL NARLAREIAY VIRMEPGVFS PEETLAQGRG SCRDSTWLQV QILRHLGFAA RFVSGYLIQL KPDLEALDGP SGTDHDFTDL HAWAEVYLPG AGWIGLDATS GLLTGESHIP LAATPHYRNA APIAGMASYA EVDFAFDMTV ARVAEHPRIT KPFSEDSWER LNALGHRVDA ALTAGDVRLT MGGEPTFVSI DDFEAGEWNT EAVGPTKRAF ADRLIRRLRD RFAPGGFLHY GQGKWYPGET LPRWTFSLYW REDGQPIWHD PALVAAEAAP ADLGAAEAER LMQGIAAELG LEPDLVVPAY EDPGEWLLKE GNLPENVTPE NSELKDPEER LRMVRVFERG LTEPSGFVLP VQRWQAQAAG RRWRSERWKL RRRHLFLVPG DSPVGYRLPL GSLPHVPPSR YPYINPTDPT VERGPLPPPA QTVPLQTPEA AVAAFTAATP GQTLVEQILG DEGAVRTALA VEVRDGRLCI FMPPVEAVED YLDLVAAAEA AAARLNLPVH VEGYAPPHDP RLKVIRVAPD PGVIEVNIHP AASWEECVSI TTAVYEEARQ CRLGADKFMI DGRHCGTGGG NHVVVGGRTP MDSPFLRRPD LLRSLILHWN RHPSLSCLFS GLFIGPTSQA PRIDEARHDS LYELEIALAQ IPGPQDPRAP LWLPDRLLRN ILTDVTGNTH RAEICIDKMF SPDGPTGRLG LVEFRGFEMP PDPRMSLAQQ LLIRALIARM WQSPVTGALT RWGTALHDRF MLQHHVWEDF LDVLADLRAH GFDLDPEWFR AQAEFRFPFC GEVTCEGAHL EIRQALEPWH VLGETGAIGG TVRYTDSSTE RLQVTLSGAD PARYRVACNG REVPLQPVAN GRAVAGVRFK AWQPAAALHP NLPVDAPLTF DLYDTWSGRA LGGCVYHVAH PGGRNYETFP VNGNEAEARR LARFTPHGHS AGHWPLRPER PHPEFPMTLD LRRPAGL
|
| |